| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,544,504 – 20,544,594 |
| Length | 90 |
| Max. P | 0.611151 |
| Location | 20,544,504 – 20,544,594 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 71.61 |
| Shannon entropy | 0.49612 |
| G+C content | 0.62142 |
| Mean single sequence MFE | -34.52 |
| Consensus MFE | -18.64 |
| Energy contribution | -20.28 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.611151 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20544504 90 - 21146708 UGGCAGGGCGACAACGGCAGGACAAUGACGACGGCUGCUCCGUCCUGGCAUCCUCCACACCAG-AAGGAGUAGGGAGCCAGGAGCAGGGAG---- ..((.(((((.(..((.((......)).))..)..))).)).(((((((.((((..((.((..-..)).)).)))))))))))))......---- ( -30.70, z-score = -0.16, R) >droSim1.chr2R 18999795 90 - 19596830 UGGCUGGGCGACAACGGCAGGACAAUGACGACGGCUGCUCCGUCCUGGCAUCCUCCACACCAG-AAGGAGUAGGGUGCCCGGAGCAAGGGG---- .((((((....)..((.((......)).)).)))))((((((....((((((((..((.((..-..)).))))))))))))))))......---- ( -34.00, z-score = -0.06, R) >droSec1.super_23 410258 90 - 989336 UGGCUGGGCGACAACGGCAGGACAAUGACGACGGCUGCUCCGUCCUGGCAUCCUCCACAUCAG-AAGGAGUAGGGUGCCAGGAGCAAGGGG---- .((((((....)..((.((......)).)).))))).((((.((((((((((((((.......-..)))...)))))))))))....))))---- ( -34.20, z-score = -0.78, R) >droYak2.chr2R 20511181 95 - 21139217 UGGCAGGGCGACAACGGCAGGACAAUGACGACGGCUGCUCCGUCCUGGCAUCCUUCGCACCAGAAAGGAGUAGGGUGCCAGGAGAAGGAGCAGAA ((.(..(.((....)).)..).))..........(((((((.((((((((((((..((.((.....)).))))))))))))))...))))))).. ( -41.60, z-score = -3.29, R) >droGri2.scaffold_15245 8374660 87 + 18325388 UGGCGUCUUCAGGACGUCGCCUUUUCAGACACUUCUGUGGCGU-CUGUCGGCUUUGCCUCUCACAUUGCAUAGAGU---CAGGGCAAGGGC---- .((((((.....))))))((((((.(((((.((.....)).))-)))...((((((.((((..........)))).---))))))))))))---- ( -32.10, z-score = -1.86, R) >consensus UGGCAGGGCGACAACGGCAGGACAAUGACGACGGCUGCUCCGUCCUGGCAUCCUCCACACCAG_AAGGAGUAGGGUGCCAGGAGCAAGGGG____ ..((.(((((.(..((.((......)).))...).)))))..((((((((((((..((.((.....)).)))))))))))))))).......... (-18.64 = -20.28 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:48:51 2011