| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,499,020 – 20,499,189 |
| Length | 169 |
| Max. P | 0.527598 |
| Location | 20,499,020 – 20,499,189 |
|---|---|
| Length | 169 |
| Sequences | 4 |
| Columns | 172 |
| Reading direction | forward |
| Mean pairwise identity | 76.08 |
| Shannon entropy | 0.38190 |
| G+C content | 0.36215 |
| Mean single sequence MFE | -38.45 |
| Consensus MFE | -16.44 |
| Energy contribution | -17.12 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.527598 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20499020 169 + 21146708 CUUCCACAGGGGGGUCGGGUCUCACUAAUGACUUUCAACAUACUGUUCGAGUCGUUCUUUAUUUUAAACGACAUUUAUAAUAACGUUUUUCA-UGC--UGAUUAAAAAGCCGUUAUAUUAUGGUAAGAGCACUCAACCCCCUUAUGCCAAAACAACUACGCCCUUGAGCUCU ....((.((((((((.(((((((...((((((((..(((.....))).))))))))...............(((.....((((((.......-.((--(........)))))))))...)))....))).)))).)))))))).)).............((......))... ( -37.70, z-score = -1.30, R) >droSec1.super_23 372542 167 + 989336 CUUCCAUAGGGGGGUCGGGUC--ACUAAUGAUUUUCAACAUACUGUCCGAGUCGUUCUGUAUUUUAAAUGAAAUUUAAUAUAACGUUUUUUA-UAU--UGAUUAAAAAGUCGUUAUAUUAUUGUAAGAGCACUCAACCCCCUUAUGACAAAGCAACUACGCCCUUGAGCUCU ....(((((((((((..((.(--(...(((........)))..)).))((((.(((((..(((((....))))).(((((((((((((((((-...--....))))))).)))))))))).....))))))))).))))))))))).(((.((......))..)))...... ( -45.30, z-score = -3.69, R) >droYak2.chr2R 20470767 165 + 21139217 CUGUUCAAGGGGGGUC-------ACUAACAAUUUUAUACAUACUGCCUUAGUUAUUCUAUGUAUCAAACAACAUUUAAUAUAAAGGUUAUCAUUUUGAUAAAAAAAAAGCUGUUGUAAUAGUAUAAGAGCACUUAACCCCCUUAAGCCAAAACAACUACGCCCUUGAGCUCC ..(((((((((((((.-------........((((((.((....(((((...((((..((((........))))..))))..)))))........)))))))).....(((.(((((....))))).))).....))))))....((............)).)))))))... ( -35.90, z-score = -1.91, R) >droEre2.scaffold_4845 21873902 164 + 22589142 CUUUCCUAGGGGAGCC---UC--ACCAAUAACUUUUAACCUAUUGUCUGAGUCGUUCUAUGUUUUAAGCAACAUUUAAUAUAGUGUUUAUCAGUUU--UGAUUUAAAAACCGUAAUAAUAUUGUAAGAGCA-UUAAUCCCCUUGUACAAAAUCAACUACGCCCUUGGGCUCU .......(((((((.(---((--(.(((((..........)))))..)))).)((((((((((......)))))....(((((((((...(.((((--(......))))).)....)))))))))))))).-....)))))).................(((....)))... ( -34.90, z-score = -1.88, R) >consensus CUUCCAUAGGGGGGUC___UC__ACUAAUAACUUUCAACAUACUGUCCGAGUCGUUCUAUAUUUUAAACAACAUUUAAUAUAACGUUUAUCA_UUU__UGAUUAAAAAGCCGUUAUAAUAUUGUAAGAGCACUCAACCCCCUUAUGCCAAAACAACUACGCCCUUGAGCUCU .......((((((................(((((...((.....))..)))))(((((.(((((((((.....)))))))))...............................((((....)))))))))......)))))).................((......))... (-16.44 = -17.12 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:48:47 2011