| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,490,850 – 20,490,915 |
| Length | 65 |
| Max. P | 0.622187 |
| Location | 20,490,850 – 20,490,915 |
|---|---|
| Length | 65 |
| Sequences | 5 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 92.00 |
| Shannon entropy | 0.14597 |
| G+C content | 0.53231 |
| Mean single sequence MFE | -16.87 |
| Consensus MFE | -17.27 |
| Energy contribution | -16.71 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.29 |
| Mean z-score | -0.55 |
| Structure conservation index | 1.02 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.622187 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20490850 65 - 21146708 UCCUGGACGUCCUGUUAGCUAGCUGGCCUUGCCGCCGUCUGGUUUUAUCAUAAUCCUGGGAUUGG (((((((.........((((((.((((......)))).)))))).........))).)))).... ( -18.17, z-score = -0.50, R) >droEre2.scaffold_4845 21865712 65 - 22589142 UCCUGGACGUCCUCUUAACUAGCUGGUCUUCCCGCCGUCUGGUUUUCUCAUAAUCCUAGGAUUGG (((((((.........((((((.((((......)))).)))))).........))).)))).... ( -17.17, z-score = -1.81, R) >droYak2.chr2R 20462643 65 - 21139217 UCCCGGACGUCCUGUUAGCUAGCUGGUCUUCCCGCCGUCUGGUUUCAUCAUAAUCCUGGGAUUGG (((((((.........((((((.((((......)))).)))))).........))).)))).... ( -18.67, z-score = -0.93, R) >droSec1.super_23 364381 65 - 989336 UCCUGGACGACCUGUUAGCUAGCUGGUCUUCCCACCGUCUGGUUUUACCAUAAUCCUGGGAUUGG (((((((.((((.(((....))).)))).))).......(((.....))).......)))).... ( -16.50, z-score = -0.16, R) >droSim1.chr2R 18952383 65 - 19596830 UCCUGGACGCCCUGUUAUCUAGCUGGUCUUCCCGCCGUCUGGUUUUACCAUAAUCCUGGGAUUGG (((((((...........((((.((((......)))).))))...........))).)))).... ( -13.85, z-score = 0.63, R) >consensus UCCUGGACGUCCUGUUAGCUAGCUGGUCUUCCCGCCGUCUGGUUUUAUCAUAAUCCUGGGAUUGG (((((((.........((((((.((((......)))).)))))).........))).)))).... (-17.27 = -16.71 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:48:46 2011