| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,401,525 – 20,401,624 |
| Length | 99 |
| Max. P | 0.870829 |
| Location | 20,401,525 – 20,401,624 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 57.41 |
| Shannon entropy | 0.73034 |
| G+C content | 0.44495 |
| Mean single sequence MFE | -22.44 |
| Consensus MFE | -8.22 |
| Energy contribution | -7.09 |
| Covariance contribution | -1.13 |
| Combinations/Pair | 1.75 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.870829 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20401525 99 + 21146708 ----------GCCUCUUCCCUGGCAGGUGAUUUCCUACGAAAU-CUGAAUCUGUCGCAU-UAUAAGUCACCAGUAGAUACAAAAAUUGUCCAAGGUCUAUAAGAAUAAUCC---- ----------(((........))).((((((((....(((...-.........)))...-...)))))))).(((((((((.....))).....))))))...........---- ( -16.90, z-score = -0.34, R) >droSim1.chr2R 18860446 87 + 19596830 --------GCCUCCUCUUCCAGGCAGGUGAUUUCCUACGAAAU-CUAAAUCUGUCGCAU-UGUGAGUCACCAG---ACUCAGGUCUA-----------AUCCUAAUAAUCC---- --------(((..........(((((((((((((....)))))-)...)))))))....-..((((((....)---))))))))...-----------.............---- ( -22.10, z-score = -2.73, R) >droSec1.super_23 274193 86 + 989336 --------ACCUCCUCUUCCUGGCAGGUAAUUUCCUACGAAAU-CUAAAUCUGUCGCAU-UGUGAGUCACCAG---ACUCAGAUCUA------------UAUGAAUAAUCC---- --------.............(((((((.(((((....)))))-....)))))))....-(.((((((....)---))))).)....------------............---- ( -16.50, z-score = -1.24, R) >droYak2.chr2R 20370192 87 + 21139217 ----------AUCUAUUCCCUGGCAGGUGACUUCCCACGAAAU-CUAAAUCUGUCGCUC-UGUGAGUCACUAGUAAAAACAAGGGU------------AUGGAAAUAAUCC---- ----------.(((((.((((.((.(((((((..(..(((...-.........)))...-.)..))))))).)).......)))).------------)))))........---- ( -21.10, z-score = -1.80, R) >droEre2.scaffold_4845 21768838 85 + 22589142 ----------UCCUCUUCCCUGGCAGGUGACUUCCUACGAAAU-CGAAAUCUGUCGCU--UGUGAGUCACCAGUAAAGA-GGGGGC------------AUAGGUAUAAGCC---- ----------(((((((..((((((((((((......((....-))......))))))--)).......))))..))))-)))(((------------.((....)).)))---- ( -27.71, z-score = -1.75, R) >droAna3.scaffold_13266 15945219 114 + 19884421 ACCUGUUGGUUUCCACCUUGUACGAGGCGGAUUCGUAGAAAUUUCGAAAUUUGCUUCGCAUUUACGCUGCCAAAAAUUUGAAAAGUGA-CAGGUACAGGCGAGAGUUGUCAGCCG (((((((.(..(((.((((....)))).)))..).......(((((((.(((((..((......))..))..))).)))))))...))-)))))...(((..((....)).))). ( -30.30, z-score = -0.59, R) >consensus __________CUCCACUCCCUGGCAGGUGAUUUCCUACGAAAU_CUAAAUCUGUCGCAU_UGUGAGUCACCAGUAAACACAAAAGU____________AUAAGAAUAAUCC____ .........................((((((((.(..(((.............))).....).))))))))............................................ ( -8.22 = -7.09 + -1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:48:39 2011