| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,385,468 – 20,385,518 |
| Length | 50 |
| Max. P | 0.834785 |
| Location | 20,385,468 – 20,385,518 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 94.74 |
| Shannon entropy | 0.07202 |
| G+C content | 0.42379 |
| Mean single sequence MFE | -7.53 |
| Consensus MFE | -7.13 |
| Energy contribution | -7.13 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.834785 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20385468 50 + 21146708 AUUAAAGUCGUAC-UUUUUCUUGUGCAUUCCACAGCCCAGGAAUCAUUCGU .........((((-........))))(((((........)))))....... ( -7.60, z-score = -1.57, R) >droSec1.super_23 258193 51 + 989336 AUUAAAGUCGUAAGUCCUUCUUGUGCAUUCCACAGCCCAGGAAUCAUUCGU ......(.(....).).((((((.((........)).))))))........ ( -7.40, z-score = -1.51, R) >droSim1.chr2R 18844574 50 + 19596830 AUUAAAGUCGUAC-UCCUUCUUGUGCAUUCCACAGCCCAGGAAUCAUUCGU .........((((-........))))(((((........)))))....... ( -7.60, z-score = -1.54, R) >consensus AUUAAAGUCGUAC_UCCUUCUUGUGCAUUCCACAGCCCAGGAAUCAUUCGU .................((((((.((........)).))))))........ ( -7.13 = -7.13 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:48:34 2011