| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,377,464 – 20,377,554 |
| Length | 90 |
| Max. P | 0.909240 |
| Location | 20,377,464 – 20,377,554 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 80.71 |
| Shannon entropy | 0.25229 |
| G+C content | 0.36091 |
| Mean single sequence MFE | -20.43 |
| Consensus MFE | -13.34 |
| Energy contribution | -14.23 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.53 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.909240 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20377464 90 - 21146708 CUCAGAUGGACAGCAAUCAUUCAGGUUAUAACCAACACAGAUUACUUUAUAUAAAGAGUGGAAUAUCUGAGGAUAGGUGCUAUCUUUCAU ....((.(((.((((...((((.(((....)))....(((((((((((......))))))....))))).))))...)))).))).)).. ( -21.00, z-score = -1.96, R) >droSec1.super_23 249886 69 - 989336 -----AUGGACAGCAAUCAUU--------------CACAGAUUACUU--UAUAGACAGUGGAAUAUCUGAGGAUAGGUGCUAUCUAUCAU -----(((((.((((...(((--------------(.(((((...((--(((.....)))))..))))).))))...)))).)))))... ( -17.10, z-score = -2.00, R) >droSim1.chr2R 18836165 74 - 19596830 CUCAGAUGGACAGCAAUCAUU--------------CACAGAUUACUU--UAUAGAAAGUGGAAUAUCUGAGGAUAGGUGCUAUCUAUCAU ....((((((.((((...(((--------------(.((((((((((--(....))))))....))))).))))...)))).)))))).. ( -23.20, z-score = -3.63, R) >consensus CUCAGAUGGACAGCAAUCAUU______________CACAGAUUACUU__UAUAGAAAGUGGAAUAUCUGAGGAUAGGUGCUAUCUAUCAU ....((((((.((((.((.......................((((((........))))))..((((....)))))))))).)))))).. (-13.34 = -14.23 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:48:33 2011