| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,368,744 – 20,368,837 |
| Length | 93 |
| Max. P | 0.638679 |
| Location | 20,368,744 – 20,368,837 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 79.89 |
| Shannon entropy | 0.31419 |
| G+C content | 0.62612 |
| Mean single sequence MFE | -32.00 |
| Consensus MFE | -24.62 |
| Energy contribution | -26.62 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.638679 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20368744 93 + 21146708 GUA-GCUGCAGUAACUCCGGCAUCAGCUUAGGGCGGAUGCACAAUGGCCACUGAUUGGG-AGACUGCGGGACAGGAGCAGAUGCAGGGGCAGGGG ((.-.(((((....((((.(((((.((.....)).))))).((((........))))))-)).((((.........)))).)))))..))..... ( -31.60, z-score = -0.97, R) >droSim1.chr2R 18827518 93 + 19596830 GUA-GCUGCAGUAACUCCGGCAGCGGCUUAGGGCCGAUGCACAAUGGCCGCUGAUUGGG-GCACUGCGGGACAGGGGCAGAUGCAGGGGCAGGGG ((.-.(((((....((((((((((((((...(((....)).)...)))))))).)))))-)..((((.........)))).)))))..))..... ( -38.00, z-score = -1.12, R) >droSec1.super_23 241305 86 + 989336 GUA-GCUGCAGUAACUCCGGCAGCGGCUUAAGGCGGAUGCACAAUGGCCGCUGAUUGGG-GCACUGCGGGAC-GGGGCAGAGGCAAAGG------ ((.-.(((((((..((((((((((((((....((....)).....)))))))).)))))-).))))))).))-...((....)).....------ ( -36.80, z-score = -2.48, R) >droYak2.chr2R 20332070 82 + 21139217 GUAUACAGCAGUUACUCCGGC---GGCUUAGGGCGGAUGCACAAUGGCGGUUGAUUGGGUGAACUGCGGG----GGGAAGAGGGAGAGA------ .......((((((((((((((---.(((...(((....)).)...))).))))...))))).)))))...----...............------ ( -21.60, z-score = -0.74, R) >consensus GUA_GCUGCAGUAACUCCGGCAGCGGCUUAGGGCGGAUGCACAAUGGCCGCUGAUUGGG_GCACUGCGGGAC_GGGGCAGAGGCAGAGG______ .....(((((((...(((((((((((((...(((....)).)...)))))))).)))))...))))))).......................... (-24.62 = -26.62 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:48:33 2011