| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,353,746 – 20,353,847 |
| Length | 101 |
| Max. P | 0.855609 |
| Location | 20,353,746 – 20,353,847 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 98.04 |
| Shannon entropy | 0.02701 |
| G+C content | 0.43940 |
| Mean single sequence MFE | -23.53 |
| Consensus MFE | -21.67 |
| Energy contribution | -22.00 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.855609 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20353746 101 - 21146708 GCAGUUGUGACCCACCGAUGAUCCCCCGGAUUAUUGCUUUUCCCACUGCACUCGAACCGAGCACUUGGUUUAAAUCAAAUUUCAGAGG-AAAACACAAUUUC ..(((((((......(((((((((...))))))))).((((((..........(((((((....)))))))...((........))))-))))))))))).. ( -24.40, z-score = -2.33, R) >droSec1.super_23 226620 102 - 989336 GCAGUUGUGACCCACAGAUGAUCCACCGGAUUAUUGCUUUUCCCACUGCACUCGAACCGAGCACUUGGUUUAAAUCAAAUUUCAGAGGAAAAACACAAUUUC ..(((((((.......((((((((...))))))))..((((((..........(((((((....)))))))...((........)))))))).))))))).. ( -23.10, z-score = -1.74, R) >droSim1.chr2R 18812611 102 - 19596830 GCAGUUGUGACCCACAGAUGAUCCACCGGAUUAUUGCUUUUCCCACUGCACUCGAACCGAGCACUUGGUUUAAAUCAAAUUUCAGAGGAAAAACACAAUUUC ..(((((((.......((((((((...))))))))..((((((..........(((((((....)))))))...((........)))))))).))))))).. ( -23.10, z-score = -1.74, R) >consensus GCAGUUGUGACCCACAGAUGAUCCACCGGAUUAUUGCUUUUCCCACUGCACUCGAACCGAGCACUUGGUUUAAAUCAAAUUUCAGAGGAAAAACACAAUUUC ..(((((((.......((((((((...))))))))..((((((..........(((((((....)))))))...((........)))))))).))))))).. (-21.67 = -22.00 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:48:28 2011