| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,315,092 – 20,315,240 |
| Length | 148 |
| Max. P | 0.824448 |
| Location | 20,315,092 – 20,315,240 |
|---|---|
| Length | 148 |
| Sequences | 4 |
| Columns | 153 |
| Reading direction | forward |
| Mean pairwise identity | 68.00 |
| Shannon entropy | 0.51114 |
| G+C content | 0.36454 |
| Mean single sequence MFE | -37.03 |
| Consensus MFE | -17.88 |
| Energy contribution | -19.38 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.824448 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20315092 148 + 21146708 GCAGCUCAUGGGUGAAG--UGGUACUUAGCUAG---UACAAAGCAAAUUUCAUCGAAUUCCAAAGUUGAGUGCAUUCUUUUAGGCGCAACUUUCAAAGAUGCAGUAAGCAAUUGAGUGUUGCAUACUUACUGGCGCCCAAAUUAUUGUUGAAA .((((...((((((.((--((((((((((((.(---(.....)).(((((....)))))....))))))))))............(((((.(((((...(((.....))).))))).))))).....))))..)))))).......))))... ( -38.20, z-score = -0.40, R) >droWil1.scaffold_180699 377668 145 - 2593675 UCUGAAUAAGCAUGAGGGCUAAAAUUUGGCGAAAUUUACGGGAUGCUUUUUAUUAGAA---GGAAAUAAAAAUAUUUUAAUAGAAUGUAUUUGAAAAUACCCA-----UGUUGAAAUACGAAAUACUUCUUAAAGAAAAAAAUACUCAUGCUA ........((((((((.((((.....))))................((((((..((((---(..........((((((((((....(((((....)))))...-----)))))))))).......)))))))))))........)))))))). ( -28.53, z-score = -2.64, R) >droSim1.chr2R 18768536 148 + 19596830 UCAACUCAAGGGUGAAG--UGGUGCUUAGCUAG---UACAAAGCAAAUCUCAUCGAAAUCCAAAGUUGAGUGCAUUCUUAUAGGCGCCACUUUCAAAGAUGCAGUAAGUAACUGAGUGUUGCAUACUUACUGGCGCCCAAAUUAUUUUUGAAA .........((((((((--(((((((((...((---......(((...((((.(..........).)))))))...))..)))))))))))).........(((((((((((.....))....))))))))).)))))............... ( -40.80, z-score = -1.81, R) >droSec1.super_23 185411 148 + 989336 UCAACUCAAGGGUGAAG--UGGUACUUGGCUAG---UACAAAGCAAAUUUCAUCGAAAUCCAAAGUUGAGUGCAUUCUUAUAGGCGCCACUUUCAAAGAUGCAGUAAGUAACUGAGUGUUGCAUACUUACUGGCGCCCAAAUUAUUUUUGAAA .....((((((((((..--(((((((..(((.(---(.....))..(((((...)))))....)))..))))).........(((((((((.....))....((((.(((((.....))))).))))...)))))))))..)))))))))).. ( -40.60, z-score = -1.88, R) >consensus UCAACUCAAGGGUGAAG__UGGUACUUAGCUAG___UACAAAGCAAAUUUCAUCGAAAUCCAAAGUUGAGUGCAUUCUUAUAGGCGCCACUUUCAAAGAUGCAGUAAGUAACUGAGUGUUGCAUACUUACUGGCGCCCAAAUUAUUUUUGAAA .....((((((((((......((((((((((................................)))))))))).........(((((((..........(((.....)))..((((((.....)))))).)))))))....)))))))))).. (-17.88 = -19.38 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:48:27 2011