| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,314,090 – 20,314,140 |
| Length | 50 |
| Max. P | 0.972220 |
| Location | 20,314,090 – 20,314,140 |
|---|---|
| Length | 50 |
| Sequences | 4 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 97.00 |
| Shannon entropy | 0.04868 |
| G+C content | 0.54000 |
| Mean single sequence MFE | -18.25 |
| Consensus MFE | -17.88 |
| Energy contribution | -17.88 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.87 |
| SVM RNA-class probability | 0.972220 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20314090 50 + 21146708 AUACGCAGCGUGGGCGGGAACUGAAUUCCCGCCAAGGUUCUGUUCCAUUU ..(((.(((.(.((((((((.....)))))))).).))).)))....... ( -18.20, z-score = -1.98, R) >droSim1.chr2R 18767561 50 + 19596830 AUACGCAGUGUGGGCGGGAACUGAAUUCCCGCCAAGGUUCUGUUCCAUUU ....((((....((((((((.....))))))))......))))....... ( -18.40, z-score = -2.27, R) >droSec1.super_23 184438 50 + 989336 AUACGCAGCGUGGGCGGGAACUGAAUUCCCGCCAAGGUUCUGUUCCAUUU ..(((.(((.(.((((((((.....)))))))).).))).)))....... ( -18.20, z-score = -1.98, R) >droYak2.chr2R 20276592 50 + 21139217 AUACGCAGCGUGGGCGGGAACAGCAUUCCCGCCAAGGUUCUGUUCCAUUU ..(((.(((.(.((((((((.....)))))))).).))).)))....... ( -18.20, z-score = -2.12, R) >consensus AUACGCAGCGUGGGCGGGAACUGAAUUCCCGCCAAGGUUCUGUUCCAUUU ....((((....((((((((.....))))))))......))))....... (-17.88 = -17.88 + 0.00)
| Location | 20,314,090 – 20,314,140 |
|---|---|
| Length | 50 |
| Sequences | 4 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 97.00 |
| Shannon entropy | 0.04868 |
| G+C content | 0.54000 |
| Mean single sequence MFE | -16.62 |
| Consensus MFE | -16.62 |
| Energy contribution | -16.62 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.88 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.79 |
| SVM RNA-class probability | 0.968048 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20314090 50 - 21146708 AAAUGGAACAGAACCUUGGCGGGAAUUCAGUUCCCGCCCACGCUGCGUAU ........(((......(((((((((...)))))))))....)))..... ( -16.90, z-score = -1.91, R) >droSim1.chr2R 18767561 50 - 19596830 AAAUGGAACAGAACCUUGGCGGGAAUUCAGUUCCCGCCCACACUGCGUAU ........(((......(((((((((...)))))))))....)))..... ( -15.80, z-score = -1.96, R) >droSec1.super_23 184438 50 - 989336 AAAUGGAACAGAACCUUGGCGGGAAUUCAGUUCCCGCCCACGCUGCGUAU ........(((......(((((((((...)))))))))....)))..... ( -16.90, z-score = -1.91, R) >droYak2.chr2R 20276592 50 - 21139217 AAAUGGAACAGAACCUUGGCGGGAAUGCUGUUCCCGCCCACGCUGCGUAU ........(((......(((((((((...)))))))))....)))..... ( -16.90, z-score = -1.72, R) >consensus AAAUGGAACAGAACCUUGGCGGGAAUUCAGUUCCCGCCCACGCUGCGUAU ........(((......(((((((((...)))))))))....)))..... (-16.62 = -16.62 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:48:26 2011