| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,304,212 – 20,304,305 |
| Length | 93 |
| Max. P | 0.634792 |
| Location | 20,304,212 – 20,304,305 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 68.09 |
| Shannon entropy | 0.58552 |
| G+C content | 0.58178 |
| Mean single sequence MFE | -30.94 |
| Consensus MFE | -10.35 |
| Energy contribution | -9.54 |
| Covariance contribution | -0.81 |
| Combinations/Pair | 1.54 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.634792 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20304212 93 + 21146708 GUACGGAGAUUGGAGCGAUGG-CUGCGCGGAUCGGGCCUUUGUUCGGGGCUGACACUGGACU------GGUUAUGAGCGCGGCUUUGGUUCUGAACCUGG ...(((.(.(..((((.(.((-((((((......((((...((((((........)))))).------))))....)))))))).).))))..).)))). ( -38.50, z-score = -2.95, R) >droWil1.scaffold_180699 366824 76 - 2593675 GUACGAAGAUUGAACUGAUUCUCUGCCGGGGCCUGCCAAUGUCGUGUGGUAGGCUCUGGACUA-----ACUGAUUGGCUGG------------------- ..............(..(((....((((((((((((((........))))))))))))).)..-----...)))..)....------------------- ( -26.30, z-score = -2.35, R) >droAna3.scaffold_13266 15843789 99 + 19884421 GUACGGAGAUUGGAGCGCUGG-GUACGCGGUUCGGUGCGAGUUUCCGGACUGGCACUGGAGUUUAAACGGUUCUGGUUCGGAUUGAAGUUCUGAGAUUGG ...(((((.((.((((((((.-.(.....)..)))))).....(((((((..(.((((.........)))).)..))))))))).)).)))))....... ( -34.00, z-score = -1.73, R) >droEre2.scaffold_4845 21666489 75 + 22589142 GUACGGAGAUUGGAGCGAUGG-CUGCGCGGAUCGGGCCUUUGGUCGGGACUGACACUGGACU------GGUUCUGAACCUGG------------------ ...(((.....(.(((....)-)).)..(((((((.((....((((....))))...)).))------))))).....))).------------------ ( -20.50, z-score = 0.60, R) >droYak2.chr2R 20266557 75 + 21139217 GUACGGAGAUUGGAGCGAUGG-CUGCGCGGAUCGGGCCUUUGUUCGGGACUGACACUGGACU------GGUUCUGAACCUGG------------------ ...(((.((((.(.(((....-.))).).))))(((((...((((((........)))))).------))))).....))).------------------ ( -22.90, z-score = -0.49, R) >droSec1.super_23 174570 93 + 989336 GUACGGAGAUUGGAGCGAUGG-CUGCGCGGAUCGGGCCUUUGUUCGGGACUGACACUGGACU------GGUUAUGAGCGUGGCUUUGGCUCUGAACCUGG ...(((.(.(..((((.(.((-(..(((......((((...((((((........)))))).------))))....)))..))).).))))..).)))). ( -38.40, z-score = -3.46, R) >droSim1.chr2R 18757684 93 + 19596830 GUACGGAGAUUGGAGCGAUGG-CUGCGCGGAUCGGGCCUUUGUUCGGGACUGACACUGGACU------GGUUAUGAGCGUGGCUUUGGUUCUGAACCUGG ...(((.(.(..((((.(.((-(..(((......((((...((((((........)))))).------))))....)))..))).).))))..).)))). ( -36.00, z-score = -2.82, R) >consensus GUACGGAGAUUGGAGCGAUGG_CUGCGCGGAUCGGGCCUUUGUUCGGGACUGACACUGGACU______GGUUAUGAGCCUGG_U___G_UCUGA___UGG ...(((........(((........)))...((((.(((......))).))))..))).......................................... (-10.35 = -9.54 + -0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:48:25 2011