| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,849,590 – 3,849,683 |
| Length | 93 |
| Max. P | 0.819436 |
| Location | 3,849,590 – 3,849,683 |
|---|---|
| Length | 93 |
| Sequences | 12 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 75.34 |
| Shannon entropy | 0.49633 |
| G+C content | 0.42389 |
| Mean single sequence MFE | -20.03 |
| Consensus MFE | -11.02 |
| Energy contribution | -10.72 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.819436 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3849590 93 + 23011544 -------CCCGCCCCUU---------UGCCGUGUUCGCAUUAAUGAGAAUAUUGUUAAAUUAGUAGACUUUGAAAUGUGAUAUAUUUGUAUGCCCAACCAUAGUGAGAG -------........((---------..(..((.(((((((...(((..(((((......)))))..)))...))))))).....(((......))).))..)..)).. ( -13.10, z-score = -0.98, R) >droSim1.chr2L 3804520 93 + 22036055 -------CCCGCCCCUU---------UGCCGUGUUCGCAUUAAUGAGAAUAUUGUUAAAUUAGUAGGCUUUGAAAUGUGAUAUAUUUGUAUGCCCAACCACAGUGAGCG -------..(((....(---------..(.(((.(((((((...(((..(((((......)))))..)))...))))))).....(((......))).))).)..)))) ( -16.80, z-score = -0.73, R) >droSec1.super_5 1951265 93 + 5866729 -------CCCGCCCCUU---------UGCCGUGUUCGCAUUAAUGAGAAUAUUGUUAAAUUAGUAGGCUUUGAAAUGUGAUAUAUUUGUAUGCCCAACCACAGUGAGCG -------..(((....(---------..(.(((.(((((((...(((..(((((......)))))..)))...))))))).....(((......))).))).)..)))) ( -16.80, z-score = -0.73, R) >droYak2.chr2L 3854725 91 + 22324452 -------CCCGCCCCUU---------UGCCGUGUUCGCAUUAAUGAGAAUAUUGUUAAAUUAGUAGGCUUUGAAAUGUGAUAUAU--GUAUGCCCAACCACAGUGAGCG -------..(((....(---------..(.(((.(((((((...(((..(((((......)))))..)))...)))))))....(--(......))..))).)..)))) ( -16.30, z-score = -0.59, R) >droEre2.scaffold_4929 3901180 87 + 26641161 -------CCCGCCCCUU---------UGCCGUGUUCACAUUAAUGAGAAUAUUGUUAAAUUAGUAGGCUUUGAAAUGUGAUAUAU------GCCCAACCAAAGAGAGCG -------..((((.(((---------((.((((((((((((...(((..(((((......)))))..)))...))))))).))))------)......))))).).))) ( -20.90, z-score = -3.67, R) >droAna3.scaffold_12916 1854595 84 + 16180835 -------CCCGCCCCUG---------U-CCGUGUUCACAUUAAUGAGAAUAUUGUUAAAUUAGUAGGCUUUGAAAUGUGAUAU--------GCCCGACCACAAGGAGCG -------..(((.((((---------(-((((((.((((((...(((..(((((......)))))..)))...))))))))))--------)...)))....))).))) ( -21.90, z-score = -3.06, R) >dp4.chr4_group3 6824180 94 - 11692001 -------CCCGCCCCUUGGUCCUUGGUCCUGUGUACACAUUAAUGAGAAUAUUGUUAAAUUAGUAGGCUUUGAAAUGUGAUAU--------GCCCAACCACAAGGAGCA -------...((.(((((....((((....(((((((((((...(((..(((((......)))))..)))...)))))).)))--------))))))...))))).)). ( -26.80, z-score = -2.43, R) >droPer1.super_1 3923812 101 - 10282868 CCCGCCCCUUGGUCCUUGGUCCUUGGUCCUGUGUACACAUUAAUGAGAAUAUUGUUAAAUUAGUAGGCUUUGAAAUGUGAUAU--------GCCCAACCACAAGGAGCA ...((.((((((.(....).)).((((...(((((((((((...(((..(((((......)))))..)))...)))))).)))--------))...)))).)))).)). ( -27.80, z-score = -1.67, R) >droWil1.scaffold_180708 9740084 97 + 12563649 ----CCGGAGUCCUUAUAGACAUUUGCUCUAUGUACACAUUAAUGAGAAUAUUGUUAAAUUAGUAGGCUUUGAAAUGUGAUAC--------GCCCAACCACAGGAAAAG ----......((((.((((((....).)))))(((((((((...(((..(((((......)))))..)))...)))))).)))--------..........)))).... ( -18.70, z-score = -0.99, R) >droVir3.scaffold_13246 2422080 87 + 2672878 ---------CGAGUGCGAGUUUGAGUCGC-----ACACAUUAAUGAGAAUAUUGUUAAAUUAGUGGGCUUUGAAAUGUGAUAU--------GCCCAACCACAGGCCGGG ---------((.((((((.......))))-----))(((((...(((..(((((......)))))..)))...))))).....--------(((........))))).. ( -19.40, z-score = -0.11, R) >droMoj3.scaffold_6500 26505445 92 + 32352404 ---------CGUGUCCGAGUCGUUGCCGCUGUGUACACAUUAAUGAGAAUAUUGUUAAAUUAGUAGGCUUUGAAAUGUGAUAU--------GCCCAACCACAGGCAGAG ---------..((.((..((.((((..((.((((.((((((...(((..(((((......)))))..)))...))))))))))--------)).)))).)).))))... ( -21.30, z-score = -0.85, R) >droGri2.scaffold_15252 5876402 86 + 17193109 ---------------CGAGUCCUGUCGCCUGUGCACACAUUAAUGAGAAUAUUGUUAAAUUAGUAGGCUUUGAAAUGUGAUAC--------GCCCAACCACAGGAACAG ---------------....((((((.(..((.((.((((((...(((..(((((......)))))..)))...))))))....--------)).))..))))))).... ( -20.50, z-score = -1.65, R) >consensus _______CCCGCCCCUU_________UGCCGUGUACACAUUAAUGAGAAUAUUGUUAAAUUAGUAGGCUUUGAAAUGUGAUAU________GCCCAACCACAGGGAGCG ...................................((((((...(((..(((((......)))))..)))...)))))).............................. (-11.02 = -10.72 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:14:47 2011