| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,286,235 – 20,286,329 |
| Length | 94 |
| Max. P | 0.912310 |
| Location | 20,286,235 – 20,286,329 |
|---|---|
| Length | 94 |
| Sequences | 7 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 72.57 |
| Shannon entropy | 0.55580 |
| G+C content | 0.52474 |
| Mean single sequence MFE | -33.59 |
| Consensus MFE | -17.69 |
| Energy contribution | -19.10 |
| Covariance contribution | 1.41 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.912310 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2R 20286235 94 + 21146708 UCAGAUGUUUCUGCAACAGCUGCCACAUCUUCGGGUUUCUUUUGCAGCACAGCCGCUGUGGGUUGGGCUGGUGGUGUAGGUGGCUGCUGAACUU .((((....))))((.((((..(((((((..(.(((((..((..((((......))))..))..))))).).))))).))..)))).))..... ( -37.80, z-score = -1.70, R) >droGri2.scaffold_15245 952747 73 + 18325388 ---------UCAUUUGUUUCGGCAACAUCUUCAGUUGAUUUUUGUAGCACAGCUGCAG---------CUGCUUGGG---GCGAUUGUUGUUGCU ---------...........(((((((....((((((.(((..(((((.........)---------))))..)))---.)))))).))))))) ( -20.50, z-score = -0.61, R) >droPer1.super_34 582099 79 - 916997 ---------------ACAGCAGCAAAAUCUUCGGGUAUCUUUUGCAGCACUGCAGCAGGAGCAACAACUGCUUGGGUUUGCGGCUGUGGCUGUU ---------------(((((.((((((((....)))....))))).((((((((((..(((((.....)))))..).)))))).))).))))). ( -28.40, z-score = -1.13, R) >droEre2.scaffold_4845 21646097 94 + 22589142 UCAGAUGUUUCUGCAACAGCAACCACGUCCUCGGGUUUCUUUUGCAGCACAGCCGCUGUGGUUUGGCCUGGUGGUGUAGGUGGCUGCUGAACUU .((((....))))...(((((.((((.((((((((((....(..((((......))))..)...))))))).))...).)))).)))))..... ( -35.50, z-score = -1.20, R) >droYak2.chr2R 20248365 94 + 21139217 UCAGAUGUCUCUGCAACAGCUACCACAUCCUCGGGUUUCUUUUGCAGCACAGCCGCUGUGGUUUGGGCUGGUGGUGUAGGUGGCUGCUGAACUU .((((....))))((.(((((((((((.((.(.(((((...(..((((......))))..)...))))).).))))).)))))))).))..... ( -36.40, z-score = -1.49, R) >droSec1.super_23 156512 94 + 989336 UCAGAUGUUUCUGAAACAGCUGCCACAUCUUCGGGUUUCUUUUGCAGCACAGCCGCUGUGGGUUGGGCUGGUGGUGUAGGUGGCUGCUGAACUU (((((....)))))..((((.((((((((....))).....(((((.(((((((.(........))))).))).)))))))))).))))..... ( -38.70, z-score = -2.40, R) >droSim1.chr2R 18738199 94 + 19596830 UCAGAUGUUUCUGCAACAGCUGCCACAUCUUCGGGUUUCUUUUGCAGCACAGCCGCUGUGGGUUGGGCUGGUGGUGUAGGUGGCUGCUGAACUU .((((....))))((.((((..(((((((..(.(((((..((..((((......))))..))..))))).).))))).))..)))).))..... ( -37.80, z-score = -1.70, R) >consensus UCAGAUGUUUCUGCAACAGCUGCCACAUCUUCGGGUUUCUUUUGCAGCACAGCCGCUGUGGGUUGGGCUGGUGGUGUAGGUGGCUGCUGAACUU ................((((.((((((((.((((.((....(..((((......))))..)...)).)))).))))).))).))))........ (-17.69 = -19.10 + 1.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:48:18 2011