| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,280,899 – 20,280,994 |
| Length | 95 |
| Max. P | 0.999070 |
| Location | 20,280,899 – 20,280,994 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 74.97 |
| Shannon entropy | 0.46659 |
| G+C content | 0.53814 |
| Mean single sequence MFE | -34.92 |
| Consensus MFE | -22.18 |
| Energy contribution | -25.02 |
| Covariance contribution | 2.84 |
| Combinations/Pair | 1.31 |
| Mean z-score | -3.08 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.63 |
| SVM RNA-class probability | 0.999070 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20280899 95 - 21146708 AUCCCCAGUGUGCUUCCCAGCCAUUCGAUACGACCCAGGGCCCUGAAAC-UGGAGCUCGCGUAUCUGAUGGUUCCGGAAGGCACUC-CGUAUUCUAU--- ......(((((.(((((.(((((((.((((((.....((((((......-.)).)))).)))))).)))))))..)))))))))).-..........--- ( -35.20, z-score = -2.89, R) >droAna3.scaffold_13266 5744520 81 + 19884421 -------------------AUCCCCCAGGACGUUUCGAAGCCCUGGGAUGUACAAUACAUACAUCUUAUGGCCGCGAAACGCACUGUUCUAUACUGUACU -------------------......(((..(((((((..(((.(((((((((.......))))))))).)))..)))))))..))).............. ( -28.90, z-score = -4.65, R) >droSim1.chr2R 18732856 95 - 19596830 AUCCCCAGUGCGCUUCCCAGCCAUUCGAUAUGACCCAGGGCCCUGCAAC-UGGAGCUCGCGUAUCUGAUGGUUCCGGAAGGCACUG-CGUAUUCUAU--- .....((((((.(((((.(((((((.((((((.....((((((......-.)).)))).)))))).)))))))..)))))))))))-..........--- ( -39.00, z-score = -3.31, R) >droSec1.super_23 151215 95 - 989336 AUCCCCAGUGCGCUUCCCAGCCAUUCGAUAUGACCCAGGGCCCUGCAAC-UGGAGCUCGCGUAUCUGAUGGUUCCGGAAGGCACUG-CGUAUUCUAU--- .....((((((.(((((.(((((((.((((((.....((((((......-.)).)))).)))))).)))))))..)))))))))))-..........--- ( -39.00, z-score = -3.31, R) >droYak2.chr2R 20242969 95 - 21139217 AUCCCCAGUGUGUUUCCCAACUAUUCGAUAUGGCUCAGGGCCCAGCAAC-UGGAGCUCGCGUAUCCGAUGGUUCCGGAAGGCACUG-UGUAUUCUAU--- .....((((((.((((..(((((((.((((((.....((((((((...)-))).)))).)))))).)))))))..)))).))))))-..........--- ( -34.30, z-score = -2.42, R) >droEre2.scaffold_4845 21640760 95 - 22589142 AUCCCCAGUGUGCUUCCCAACUAUUCGAUAUGGCUCAGGGCCCUGCAAC-UGGAGCUCGCGUAUCUGAUGGUUCCGGAAGGCACUG-UGUAUUCUAU--- .....((((((.(((((.(((((((.((((((.....((((((......-.)).)))).)))))).)))))))..)))))))))))-..........--- ( -33.10, z-score = -1.92, R) >consensus AUCCCCAGUGUGCUUCCCAACCAUUCGAUAUGACCCAGGGCCCUGCAAC_UGGAGCUCGCGUAUCUGAUGGUUCCGGAAGGCACUG_CGUAUUCUAU___ .....((((((.(((((..((((((.((((((.....((((((........)).)))).)))))).))))))...))))))))))).............. (-22.18 = -25.02 + 2.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:48:18 2011