| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,255,047 – 20,255,097 |
| Length | 50 |
| Max. P | 0.926260 |
| Location | 20,255,047 – 20,255,097 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 99.20 |
| Shannon entropy | 0.01444 |
| G+C content | 0.40400 |
| Mean single sequence MFE | -6.00 |
| Consensus MFE | -6.00 |
| Energy contribution | -6.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.63 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.926260 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20255047 50 - 21146708 CCCACCAGAGAACAAAACACCUUUGGCCUAAUUGAAUGCCAAUUUAUUAC ....((((((..........))))))...(((((.....)))))...... ( -6.00, z-score = -1.59, R) >droSim1.chr2R 18705889 50 - 19596830 CCCACCAGAGAACAAAACACCUUUGGCCUAAUUGAAUGCCAAUUUAUUAC ....((((((..........))))))...(((((.....)))))...... ( -6.00, z-score = -1.59, R) >droSec1.super_23 125554 50 - 989336 CCCACCAGAGAACAAAACACCUUUGGCCUAAUUGAAUGCCAAUUUAUUAC ....((((((..........))))))...(((((.....)))))...... ( -6.00, z-score = -1.59, R) >droEre2.scaffold_4845 21613135 50 - 22589142 CCCACCAGAGAACAAAACACCUUUGGCCUAAUUGAAUGCCAAUUUAUUAC ....((((((..........))))))...(((((.....)))))...... ( -6.00, z-score = -1.59, R) >droYak2.chr2R 20215390 50 - 21139217 CCCACCAGAGAACGAAACACCUUUGGCCUAAUUGAAUGCCAAUUUAUUAC ....((((((..........))))))...(((((.....)))))...... ( -6.00, z-score = -1.80, R) >consensus CCCACCAGAGAACAAAACACCUUUGGCCUAAUUGAAUGCCAAUUUAUUAC ....((((((..........))))))...(((((.....)))))...... ( -6.00 = -6.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:48:10 2011