| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,232,548 – 20,232,643 |
| Length | 95 |
| Max. P | 0.888580 |
| Location | 20,232,548 – 20,232,643 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 72.18 |
| Shannon entropy | 0.35765 |
| G+C content | 0.34870 |
| Mean single sequence MFE | -12.30 |
| Consensus MFE | -9.46 |
| Energy contribution | -9.80 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.888580 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20232548 95 + 21146708 GACCAUUUGUGUACAUUACUCGUCAGUUCAAAUAUUCAAAUCUUUCUCUUGUGUCCAUUACCAAUUAUUAGUUCCACUUGGAAGUAUGUUUAUUG (((.....(((.....)))..)))......((((..((...(((((....(((...((((........))))..)))..)))))..))..)))). ( -9.00, z-score = 0.78, R) >droSec1.super_23 111548 76 + 989336 -----------------ACUCUUCAAUUCAAAUAUUCAA--CUUUCAUUUGUGACCACUACCAAGUAUUGCUUCCACUUGGAGGCAUGCUUAUUG -----------------......................--.....................((((((.((((((....)))))))))))).... ( -14.40, z-score = -2.43, R) >droSim1.chr2R 18691793 74 + 19596830 -------------------ACUCUAAUUCAAAUAUUCAA--CUUUCUUUUGUGACCACUACCAAGAAUUGCUUCCACUUGGAAGCAUGCUUAUUG -------------------...........((((..((.--..(((((..(((.....))).))))).(((((((....)))))))))..)))). ( -13.50, z-score = -3.06, R) >consensus _________________ACUCUUCAAUUCAAAUAUUCAA__CUUUCUUUUGUGACCACUACCAAGUAUUGCUUCCACUUGGAAGCAUGCUUAUUG ..............................................................((((((.((((((....)))))))))))).... ( -9.46 = -9.80 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:48:06 2011