| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,231,609 – 20,231,717 |
| Length | 108 |
| Max. P | 0.882982 |
| Location | 20,231,609 – 20,231,717 |
|---|---|
| Length | 108 |
| Sequences | 13 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.49 |
| Shannon entropy | 0.44294 |
| G+C content | 0.58333 |
| Mean single sequence MFE | -45.99 |
| Consensus MFE | -17.87 |
| Energy contribution | -18.31 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.59 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.882982 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20231609 108 + 21146708 AGAAUGGAUCCGACGCGAGG---UGACUCGCGGUACAAUCUCAACUACUCGAUGAGUAGCAUAGGGCUGAGCCUGGCGGAUCCGGCGGACAUGUACGGCAACCCGGCCCUG--------- .....(((((((.((((((.---...)))))(((.((..((...((((((...))))))....))..)).)))..))))))))(((((...((.....))..)).)))...--------- ( -43.00, z-score = -1.85, R) >anoGam1.chr3L 3954404 104 + 41284009 AUAAUGGAUCCCACCGGUGGGCGCGAUUCGCGCUACAAUCUGAACUACAGUAUGAGCAUGAUGAG------------CGAAUCGCCAGAGAUAUACGGCAACCCGAACGUGUCUCU---- .........((((....)))).((((((((((((.((..(((.....)))..))))).......)------------)))))))).((((((((.(((....)))...))))))))---- ( -33.81, z-score = -1.79, R) >droGri2.scaffold_15245 892193 117 + 18325388 AGAAUGGAUCCGACGCGCGG---CGAUUCGCGCUAUAACCUAAACUACUCGAUGAGUAGCAUUGGGUUAAGUCUCGCCGAUCAGGCCGACAUGUAUGGCAAUCCUGCCGUUGCGGCACUG .((.(((....(((((((((---....))))))..((((((((.((((((...))))))..)))))))).)))...))).))((((((.((...((((((....)))))))))))).)). ( -45.80, z-score = -2.68, R) >droMoj3.scaffold_6496 26139323 117 + 26866924 AGAAUGGAUCCCACGCGCGG---CGACUCGCGCUACAACCUAAACUACUCGAUGAGUAGCAUAGGUCUCAGUCUGGCCGACCAGGCCGACAUGUACGGCAAUCCCGCCGUCGCUGCCCUG .(..(((...)))..)((((---((((....(.(((((((((..((((((...))))))..)))))....(((.((((.....))))))).)))))(((......))))))))))).... ( -46.20, z-score = -2.94, R) >droVir3.scaffold_12875 7344543 117 + 20611582 AGAAUGGAUCCCACGCGCGG---UGACGCGCGCUAUAACAUAAACUACUCAAUGAGUAGUAUAGGCUUAAGUCUGGCCGAUCAGGCCGACAUGUAUGGCAAUCCCGCGGUGGCAGCGCUU .....((((.....(((((.---...)))))((((((.(((..(((((((...)))))))..........(((.((((.....)))))))))))))))).))))(((.......)))... ( -46.30, z-score = -2.53, R) >droWil1.scaffold_180745 1300049 117 + 2843958 AGAAUGGAUCCGACGCGAGG---UGACUCGCGCUAUAAUCUAAACUACUCGAUGAGUAGUAUUGGAUUAAGUCUGGCCGAUCAGGCCGAUAUGUAUGGCAAUCCGGCGGUGGCAGCGCUG .....((((.....(((((.---...)))))(((((((((((((((((((...))))))).)))))))).(((.((((.....))))))).....)))).))))((((.......)))). ( -47.60, z-score = -3.40, R) >dp4.chr3 1342052 117 - 19779522 AGAAUGGACCCGACGCGAGG---UGACUCGCGCUAUAACCUAAACUACUCGAUGAGUAGUAUAGGCCUUAGCCUCGCCGACCAGGCCGAUAUGUACGGCAAUCCGGCGGUGGCGGCCCUG .....((.((.(.((((((.---...))))))).....((((.(((((((...))))))).)))).....(((((((((.....((((.......))))....)))))).))))).)).. ( -52.00, z-score = -3.76, R) >droPer1.super_34 532183 117 - 916997 AGAAUGGACCCGACGCGAGG---UGACUCGCGCUAUAACCUAAACUACUCGAUGAGUAGUAUAGGCCUUAGCCUCGCCGACCAGGCCGAUAUGUACGGCAAUCCGGCGGUGGCGGCCCUG .....((.((.(.((((((.---...))))))).....((((.(((((((...))))))).)))).....(((((((((.....((((.......))))....)))))).))))).)).. ( -52.00, z-score = -3.76, R) >droAna3.scaffold_13266 5705490 117 - 19884421 AGAAUGGAUCCGACGCGGGG---CGACUCGCGCUACAACCUCAACUACUCGAUGAGUAGUAUAGGUCUCAGUCUCGCCGACCAGGCGGACAUGUACGGCAAUCCGGCGGUGGCCGCCCUG .....(((((((.((((((.---...)))))).((((((((..(((((((...)))))))..))))....(((.((((.....))))))).)))))))..))))(((((...)))))... ( -51.10, z-score = -2.55, R) >droEre2.scaffold_4845 21597610 108 + 22589142 AGAAUGGAUCCGACGCGAGG---UGACUCGCGGUACAACCUCAACUACUCGAUGAGUAGCAUCGGGCUGAGCCUGGCGGAUCCGGCGGACAUGUACGGCAACCCGGCCCUG--------- .....(((((((.((((((.---...))))))...((..((((....(((((((.....))))))).))))..)).)))))))(((((...((.....))..)).)))...--------- ( -45.10, z-score = -2.09, R) >droYak2.chr2R 20199648 108 + 21139217 AGAAUGGAUCCGACGCGAGG---UGACUCGCGGUACAAUCUCAACUACUCGAUGAGUAGCAUCGGGCUGAGCCUGGCGGAUCCGGCGGACAUGUACGGCAACCCGGCCCUG--------- .....(((((((.((((((.---...))))))...((..((((....(((((((.....))))))).))))..)).)))))))(((((...((.....))..)).)))...--------- ( -45.00, z-score = -2.12, R) >droSec1.super_23 110649 108 + 989336 AGAAUGGAUCCGACGCGAGG---UGACUCGCGGUACAAUCUCAACUACUCGAUGAGUAGCAUCGGGCUGAGCCUGGCGGAUCCGGCGGACAUGUACGGCAACCCGGCCCUG--------- .....(((((((.((((((.---...))))))...((..((((....(((((((.....))))))).))))..)).)))))))(((((...((.....))..)).)))...--------- ( -45.00, z-score = -2.12, R) >droSim1.chr2R 18690903 108 + 19596830 AGAAUGGAUCCGACGCGAGG---UGACUCGCGGUACAAUCUCAACUACUCGAUGAGUAGCAUCGGGCUGAGCCUGGCGGAUCCGGCGGACAUGUACGGCAACCCGGCCCUG--------- .....(((((((.((((((.---...))))))...((..((((....(((((((.....))))))).))))..)).)))))))(((((...((.....))..)).)))...--------- ( -45.00, z-score = -2.12, R) >consensus AGAAUGGAUCCGACGCGAGG___UGACUCGCGCUACAACCUAAACUACUCGAUGAGUAGCAUAGGGCUGAGCCUGGCCGAUCAGGCCGACAUGUACGGCAAUCCGGCCGUGGC_GC_CU_ .....((..(((.((((((.......)))))).((((.......((((((...))))))...........(((..........))).....)))))))....))................ (-17.87 = -18.31 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:48:05 2011