| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,207,203 – 20,207,302 |
| Length | 99 |
| Max. P | 0.545171 |
| Location | 20,207,203 – 20,207,302 |
|---|---|
| Length | 99 |
| Sequences | 7 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 88.79 |
| Shannon entropy | 0.21851 |
| G+C content | 0.58085 |
| Mean single sequence MFE | -38.31 |
| Consensus MFE | -27.00 |
| Energy contribution | -28.23 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.545171 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20207203 99 + 21146708 GUCGGCUGGAGCGACUCCAGCCAAGCGACCAA-GCUGUUGACCAUUUGGCUGCGGCA-CGUCGUAAGAGUGCUCGAUGAUAUAACCAGGCCCGGGCCAAAA---- (((((((((((...)))))))).(((......-)))...)))..((((((..(((((-(.((....)))))).)).........((......)))))))).---- ( -39.50, z-score = -2.15, R) >droWil1.scaffold_180745 1228462 105 + 2843958 GUCGGUCGCUCCAGCCCGAGUCAUGCUGCUGCUGCUGCUGACCAUUUGGCUGGCACGUCGUCGUAAGAGUGCUCGAUGAUAUAACCAGGCCCAGGCCAAAACAUA ((((..((((((((((.((((((.((.((....)).))))))..)).)))))..(((....)))..)))))..))))..........(((....)))........ ( -35.80, z-score = -0.65, R) >droSim1.chr2R 18677833 99 + 19596830 GUCGGCUGGAGCGACUCCAGCCAAGCGACCAA-GCUGUUGACCAUUUGGCUGCGGCA-CGUCGUAAGAGUGCUCGAUGAUAUAACCAGGCCCGGGCCAAAA---- (((((((((((...)))))))).(((......-)))...)))..((((((..(((((-(.((....)))))).)).........((......)))))))).---- ( -39.50, z-score = -2.15, R) >droSec1.super_23 86352 99 + 989336 GUCGGCUGGAGCGACUCCAGCCAAGCGACCAA-GCUGUUGACCAUUUGGCUGCGGCA-CGUCGUAAGAGUGCUCGAUGAUAUAACCAGGCCCGGGCCAAAA---- (((((((((((...)))))))).(((......-)))...)))..((((((..(((((-(.((....)))))).)).........((......)))))))).---- ( -39.50, z-score = -2.15, R) >droYak2.chr2R 20173964 99 + 21139217 GUCGGCUGGAGCGACUCCAGCCAAGCGACCAA-GCUGUUGACCAUUUGGCUGCGGCA-CGUCGUAAGAGUGCUCGAUGAUAUAACCAGGCCCGGGCCAAUA---- (((((((((((...))))))))..(((.((((-(.((.....))))))).)))((((-(.((....))))))).)))..........(((....)))....---- ( -38.50, z-score = -1.81, R) >droEre2.scaffold_4845 21573222 99 + 22589142 GUCGGCUGGAGCGACUCCAGCCAAGCGACCAA-GCUGUUGACCAUUUGGCUGCGGCA-CGUCGUAAGAGUGCUCGAUGAUAUAACCAGGCCCGGGCCAAAA---- (((((((((((...)))))))).(((......-)))...)))..((((((..(((((-(.((....)))))).)).........((......)))))))).---- ( -39.50, z-score = -2.15, R) >droAna3.scaffold_13266 5680634 92 - 19884421 -----UUCGA--GGCUCCAGCCAAGCGGCCAA-GCUGUUGACCAUUUGGCUGCGGCA-CGUCGUAAGAGUGCUCGAUGAUAUAACCAGGCCCAGGCCAAAA---- -----.((((--(((....)))..((((((((-(.((.....))))))))))).(((-(.((....))))))))))...........(((....)))....---- ( -35.90, z-score = -2.28, R) >consensus GUCGGCUGGAGCGACUCCAGCCAAGCGACCAA_GCUGUUGACCAUUUGGCUGCGGCA_CGUCGUAAGAGUGCUCGAUGAUAUAACCAGGCCCGGGCCAAAA____ ...((((((((...))))))))..(((((....(((((.(.((....))).)))))...))))).......................(((....)))........ (-27.00 = -28.23 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:47:58 2011