| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,843,912 – 3,844,005 |
| Length | 93 |
| Max. P | 0.885898 |
| Location | 3,843,912 – 3,844,005 |
|---|---|
| Length | 93 |
| Sequences | 12 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 85.95 |
| Shannon entropy | 0.28551 |
| G+C content | 0.36697 |
| Mean single sequence MFE | -21.16 |
| Consensus MFE | -13.13 |
| Energy contribution | -13.31 |
| Covariance contribution | 0.18 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.885898 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3843912 93 + 23011544 UAAUCAGACGCGGGUCAAAA-UAUUUACCACUUGACCCUAUUGAUUUAAUUAAAUAGUUUCAAGACAUU--CAACUGUUUGUUGGCCGCGCAAAAU------------------- ......(.(((((.......-.........(((((..(((((..........)))))..)))))....(--((((.....))))))))))).....------------------- ( -22.00, z-score = -2.78, R) >droSim1.chr2L 3798924 94 + 22036055 UAAUCAGACGCGGGUCAAAAAUAUUUACCACUUGACCCUAUUGAUUUAAUUAAAUAGUUGCAAGAAAUU--CAACUGUUUGUUGGCCGCGCAAAAC------------------- ......(.((((((((((.............)))))))............((((((((((.((....))--))))))))))......)))).....------------------- ( -23.92, z-score = -3.06, R) >droSec1.super_5 1945645 93 + 5866729 UAAUCAGACGCGGGUCAAAA-UAUUUACCACUUGACCCUAUUGAUUUAAUUAAAUAGUUGCAAGACAUU--CAACUGUUUGUUGGCCGCGCAAAAC------------------- ......(.((((((((((..-..........)))))))............((((((((((.((....))--))))))))))......)))).....------------------- ( -22.00, z-score = -2.35, R) >droYak2.chr2L 3848851 93 + 22324452 UAAUCAGACGCGGGUCAAAA-UAUUUACCACUUGACCCUAUUGAUUUAAUUAAAUAGUUUCAAGACAUU--CAACUGUUUGUUGGCCGCGCAAAAC------------------- ......(.(((((.......-.........(((((..(((((..........)))))..)))))....(--((((.....))))))))))).....------------------- ( -22.00, z-score = -2.78, R) >droEre2.scaffold_4929 3895482 93 + 26641161 UAAUCAGACGCGGGUCAAAA-UAUUUACCACUUGACCCUAUUGAUUUAAUUAAAUAGUUUCAAGACAUU--CAACUGUUUGUUGGCCGCGCAAAAC------------------- ......(.(((((.......-.........(((((..(((((..........)))))..)))))....(--((((.....))))))))))).....------------------- ( -22.00, z-score = -2.78, R) >droAna3.scaffold_12916 1849497 93 + 16180835 UAAUCAGACGCGGGUCAAAA-UAUUUACCACUUGACCCUAUUGAUUUAAUUAAAUAGUUUCAAGACAUU--CAACUGUUUGUUGGCCGCGCAAAAC------------------- ......(.(((((.......-.........(((((..(((((..........)))))..)))))....(--((((.....))))))))))).....------------------- ( -22.00, z-score = -2.78, R) >dp4.chr4_group3 6817832 93 - 11692001 UAAUCAGACGCGGGUCAAAA-UAUUUACCACUUGACCCUAUUGAUUUAAUUAAAUAGUUUCAAGACAUU--CAACUGUUUGUUGGCCGCGCAAAAC------------------- ......(.(((((.......-.........(((((..(((((..........)))))..)))))....(--((((.....))))))))))).....------------------- ( -22.00, z-score = -2.78, R) >droPer1.super_1 3917561 93 - 10282868 UAAUCAGACGCGGGUCAAAA-UAUUUACCACUUGACCCUAUUGAUUUAAUUAAAUAGUUUCAAGACAUU--CAACUGUUUGUUGGCCGCGCAAAAC------------------- ......(.(((((.......-.........(((((..(((((..........)))))..)))))....(--((((.....))))))))))).....------------------- ( -22.00, z-score = -2.78, R) >droWil1.scaffold_180708 9731147 94 + 12563649 UAAUCAGACGCGGGUCAAAA-UAUUUACCACUUGACCCGAUUGAUUUAAUUAAAUAGUAGCAAGACAUUUUCUACAAACUACAAAU-GAGAAAACU------------------- .((((((...((((((((..-..........)))))))).))))))..........((((.(((....)))))))...........-.........------------------- ( -17.30, z-score = -3.00, R) >droVir3.scaffold_13246 2413103 111 + 2672878 UAAUCAGACGCGGGUCAAAA-UAUUUACCACUUGACCCUAUUGAUUUAAUUAAAUAGUUGCAAGACAUU--CAACCGUUUGUUG-UCGCACAAACCCGAAACUCGAGGCCCCAAC .........(((((((((..-..........)))))))....(((.....((((..((((.((....))--))))..))))..)-)))).....((((.....)).))....... ( -20.20, z-score = -0.81, R) >droMoj3.scaffold_6500 26496707 105 + 32352404 UAAUCAGACGCGGGUCAAAA-UAUUUACCACUUGACCCUAUUGAUUUAAUUAAAUAGUUGCAAGACAUU--CAACCAUUUGUUG-UCGCACAAUCCCCAAAACUCAAUG------ .........(((((((((..-..........)))))))....(((.....(((((.((((.((....))--)))).)))))..)-))))....................------ ( -17.10, z-score = -1.47, R) >droGri2.scaffold_15252 5868243 111 + 17193109 UAAUCAGACGCGGGUCAAAA-UAUUUACCACUUGACCCGAUUGAUUUAAUUAAAUAGUUGCAAGACAUU--CAACCAUUUGUUG-UCGCACAAACCAGAAAGCUACAAAACGCGC .((((((...((((((((..-..........)))))))).))))))..........((.((..((((..--(((....))).))-))))))..........((........)).. ( -21.40, z-score = -1.55, R) >consensus UAAUCAGACGCGGGUCAAAA_UAUUUACCACUUGACCCUAUUGAUUUAAUUAAAUAGUUGCAAGACAUU__CAACUGUUUGUUGGCCGCGCAAAAC___________________ .........(((((((((.............))))))).................................((((.....))))...)).......................... (-13.13 = -13.31 + 0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:14:45 2011