| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,186,580 – 20,186,701 |
| Length | 121 |
| Max. P | 0.876711 |
| Location | 20,186,580 – 20,186,673 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 99.14 |
| Shannon entropy | 0.01553 |
| G+C content | 0.43441 |
| Mean single sequence MFE | -23.70 |
| Consensus MFE | -23.22 |
| Energy contribution | -23.22 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.650029 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20186580 93 - 21146708 CCUGUUGGUGUCAGCUGCAAUGGCUGUUUUUGUUGUUGCUUUUAUUGUUAUUAGCUAUGCGAACGUAUUCAUGCACUUCUGCACCCACAACUG ..(((.((((.(((.((((.((..((..(((((....(((..((....))..)))...)))))..))..))))))...))))))).))).... ( -24.10, z-score = -1.29, R) >droEre2.scaffold_4845 21552291 93 - 22589142 CCUGUUGGUGUCAGCUGCAAUGGCUGUUCUUGUUGUUGCUUUUAUUGUUAUUAGCUAUGCGAACGUAUUCAUGCACUUCUGCACCCACAACUG ..(((.((((.(((..((((..((.......))..))))..............((.((((....))))....))....))))))).))).... ( -23.30, z-score = -0.99, R) >droYak2.chr2R 20152763 93 - 21139217 CCUGUUGGUGUCAGCUGCAAUGGCUGUUUUUGUUGUUGCUUUUAUUGUUAUUAGCUAUGCGAACGUAUUCAUGCACUUCUGCACCCACAACUG ..(((.((((.(((.((((.((..((..(((((....(((..((....))..)))...)))))..))..))))))...))))))).))).... ( -24.10, z-score = -1.29, R) >droSec1.super_23 66032 93 - 989336 CCUGUUGGUGUCAGCUGCAAUGGCUGUUUUUGUUGUUGCUUUUAUUGUUAUUAGCUAUGCGAACGUAUUCAUGCACUUCUGCACCCACAACUG ..(((.((((.(((.((((.((..((..(((((....(((..((....))..)))...)))))..))..))))))...))))))).))).... ( -24.10, z-score = -1.29, R) >droSim1.chr2R 18648220 93 - 19596830 CCUGUUGGUGUCAGCUGCAAUGGCUGUUUUUGUUGUUGCCUUUAUUGUUAUUAGCUAUGCGAACGUAUUCAUGCACUUCUGCACCCACAACUG ..(((.((((.(((..((((..((.......))..))))..............((.((((....))))....))....))))))).))).... ( -22.90, z-score = -0.86, R) >consensus CCUGUUGGUGUCAGCUGCAAUGGCUGUUUUUGUUGUUGCUUUUAUUGUUAUUAGCUAUGCGAACGUAUUCAUGCACUUCUGCACCCACAACUG ..(((.((((.(((..((((..((.......))..))))..............((.((((....))))....))....))))))).))).... (-23.22 = -23.22 + 0.00)
| Location | 20,186,606 – 20,186,701 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 96.67 |
| Shannon entropy | 0.05323 |
| G+C content | 0.43158 |
| Mean single sequence MFE | -21.38 |
| Consensus MFE | -21.12 |
| Energy contribution | -20.75 |
| Covariance contribution | -0.38 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.876711 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20186606 95 + 21146708 UACGUUCGCAUAGCUAAUAACAAUAAAAGCAACAACAAAAACAGCCAUUGCAGCUGACACCAACAGGCAACAUCGGAGUUGUUGCUGCAACAUCG ...(((.((.((.....))........(((((((((.....((((.......))))...((....(....)...)).)))))))))))))).... ( -20.80, z-score = -1.59, R) >droEre2.scaffold_4845 21552317 95 + 22589142 UACGUUCGCAUAGCUAAUAACAAUAAAAGCAACAACAAGAACAGCCAUUGCAGCUGACACCAACAGGCAACAUCGGAGUUGUUGCUGCAACAUUG ...(((.((.((.....))........(((((((((.....((((.......))))...((....(....)...)).)))))))))))))).... ( -20.80, z-score = -1.01, R) >droSec1.super_23 66058 95 + 989336 UACGUUCGCAUAGCUAAUAACAAUAAAAGCAACAACAAAAACAGCCAUUGCAGCUGACACCAACAGGCAACAAGGGAGUUGUUGUUGCAACAUCG ............................((((((((((...((((.......))))...((....(....)...))..))))))))))....... ( -21.50, z-score = -1.73, R) >droSim1.chr2R 18648246 95 + 19596830 UACGUUCGCAUAGCUAAUAACAAUAAAGGCAACAACAAAAACAGCCAUUGCAGCUGACACCAACAGGCAACAUGGGAGUUGUUGCUGCAACAUCG ...(((.((.((.....))........(((((((((.....((((.......))))...(((...(....).)))..)))))))))))))).... ( -22.40, z-score = -1.32, R) >consensus UACGUUCGCAUAGCUAAUAACAAUAAAAGCAACAACAAAAACAGCCAUUGCAGCUGACACCAACAGGCAACAUCGGAGUUGUUGCUGCAACAUCG ...(((.((.((.....))........(((((((((.....((((.......))))...((....(....)...)).)))))))))))))).... (-21.12 = -20.75 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:47:56 2011