| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,172,890 – 20,172,943 |
| Length | 53 |
| Max. P | 0.845759 |
| Location | 20,172,890 – 20,172,943 |
|---|---|
| Length | 53 |
| Sequences | 5 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 80.00 |
| Shannon entropy | 0.36080 |
| G+C content | 0.49811 |
| Mean single sequence MFE | -15.08 |
| Consensus MFE | -11.28 |
| Energy contribution | -11.28 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.845759 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20172890 53 + 21146708 UUGAUGGUGUGAACCUGAGCAGCUGCACGUGUUUCGCCAUCCUUUAAAAUGGG ..(((((((.((((.((.((....)).)).)))))))))))............ ( -15.20, z-score = -1.48, R) >droSim1.chr2R_random 2987382 53 + 2996586 UUGAUGGUGCGAACCUGAGCAGCUGCACGUGUUCCACCAUCCUUUAAAAUGGG ..(((((((.((((.((.((....)).)).)))))))))))............ ( -18.50, z-score = -2.77, R) >droYak2.chr2R 20138788 53 + 21139217 UUGAUGGUGUGAACCUGAGCAGCUGUACGUGCUCCGCCAUCCUUUAAACUGGG ..(((((((.......(((((........))))))))))))............ ( -13.61, z-score = -0.84, R) >droEre2.scaffold_4845 21537110 53 + 22589142 UUGAUGGUGUGAACCUGAGCAGCUGUUCGCGUUGCGCCAUCCUUUAAAGUGGG ..((((((((.(((.(((((....))))).)))))))))))............ ( -18.40, z-score = -2.23, R) >droAna3.scaffold_13266 5645489 53 - 19884421 CUAAUGGUGUGAAAUCCAGCAGCUGUAGGUGUUCGAGUGCGCUUUAAAAAGUU .....((((((...((.((((.(....).)))).)).)))))).......... ( -9.70, z-score = -0.21, R) >consensus UUGAUGGUGUGAACCUGAGCAGCUGUACGUGUUCCGCCAUCCUUUAAAAUGGG ..(((((((.((((.((.((....)).)).)))))))))))............ (-11.28 = -11.28 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:47:53 2011