| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,171,838 – 20,171,893 |
| Length | 55 |
| Max. P | 0.618702 |
| Location | 20,171,838 – 20,171,893 |
|---|---|
| Length | 55 |
| Sequences | 3 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 95.15 |
| Shannon entropy | 0.06679 |
| G+C content | 0.35758 |
| Mean single sequence MFE | -10.03 |
| Consensus MFE | -9.52 |
| Energy contribution | -9.30 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.618702 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20171838 55 + 21146708 UAUGACACGCAUCGUCUUCAAAAGAUAGCUAGAAGAUAGAUGGGAUAUUCAAUUG .......(.((((((((((............)))))).)))).)........... ( -10.50, z-score = -1.43, R) >droSim1.chr2R_random 2986313 55 + 2996586 UGUGACACGCAUCAUCUUCAAAAGCUAGCUAGAAGAUAGAUGGAAUAUUCAAUUG .........((((((((((...((....)).)))))).))))............. ( -9.80, z-score = -0.81, R) >droSec1.super_23 51318 55 + 989336 UAUGACACGCAUCAUCUUCAAAAGCUAGCUAGAAGAUAGAUGGAAUAUUCAAUUG .........((((((((((...((....)).)))))).))))............. ( -9.80, z-score = -1.35, R) >consensus UAUGACACGCAUCAUCUUCAAAAGCUAGCUAGAAGAUAGAUGGAAUAUUCAAUUG .........((((((((((...((....)).)))))).))))............. ( -9.52 = -9.30 + -0.22)
| Location | 20,171,838 – 20,171,893 |
|---|---|
| Length | 55 |
| Sequences | 3 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 95.15 |
| Shannon entropy | 0.06679 |
| G+C content | 0.35758 |
| Mean single sequence MFE | -10.43 |
| Consensus MFE | -9.53 |
| Energy contribution | -9.87 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.515658 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20171838 55 - 21146708 CAAUUGAAUAUCCCAUCUAUCUUCUAGCUAUCUUUUGAAGACGAUGCGUGUCAUA ....(((....(.((((..(((((............))))).)))).)..))).. ( -7.80, z-score = -0.69, R) >droSim1.chr2R_random 2986313 55 - 2996586 CAAUUGAAUAUUCCAUCUAUCUUCUAGCUAGCUUUUGAAGAUGAUGCGUGUCACA ....(((.(((..((((.((((((.((....))...)))))))))).)))))).. ( -11.70, z-score = -1.58, R) >droSec1.super_23 51318 55 - 989336 CAAUUGAAUAUUCCAUCUAUCUUCUAGCUAGCUUUUGAAGAUGAUGCGUGUCAUA ....(((.(((..((((.((((((.((....))...)))))))))).)))))).. ( -11.80, z-score = -1.77, R) >consensus CAAUUGAAUAUUCCAUCUAUCUUCUAGCUAGCUUUUGAAGAUGAUGCGUGUCAUA ....(((.(((..((((.((((((.((....))...)))))))))).)))))).. ( -9.53 = -9.87 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:47:52 2011