| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,157,022 – 20,157,142 |
| Length | 120 |
| Max. P | 0.800595 |
| Location | 20,157,022 – 20,157,142 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 132 |
| Reading direction | forward |
| Mean pairwise identity | 69.47 |
| Shannon entropy | 0.46747 |
| G+C content | 0.49782 |
| Mean single sequence MFE | -30.52 |
| Consensus MFE | -20.58 |
| Energy contribution | -20.70 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.800595 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20157022 120 + 21146708 --UCUCCUCAGCCCGAUGAACUCGACCCACUGCCACAGAUUGGAGGCAAUGCCUCAACAUGUGGCCAUUUA----------ACCCAGAGGCGCAUUUCCUAUAGCCAUAAAUUGAAGUAGUCAGGAACCUUC --..((((((......)))....(((..(((((((((.....(((((...)))))....))))))......----------.......(((............))).........))).))).)))...... ( -29.90, z-score = -0.94, R) >droEre2.scaffold_4845 21519217 105 + 22589142 ---------UACCU-CUGGACUCGACCCACUGCCACAGGUUGGAGGUGCUGCCUCAACAUGUAGCCAUUUC---------CCCCAAAGGAAAUU-CCCUCAUAGCCAUACAUCGAGGUAUUCAGG------- ---------(((((-((((.......)))........(((((((((.(((((........))))).(((((---------(......)))))).-.)))).))))).......))))))......------- ( -30.20, z-score = -1.42, R) >droYak2.chr2R 20123457 124 + 21139217 UAUCUUGCUAAUCUGCUGAACUCGACCCACUGCCACAGAUUGGAGGUGGUGCCUCAACUUGUGGCCAUUUCAUUCCACUUCACCCAAAGACUCA-UUCUCAUAGGAAUGCAUCGAGGUAUUCAGG------- ...............(((((......(((((.(((.....))).)))))((((((.....((((..........))))..........((..((-((((....))))))..))))))))))))).------- ( -31.80, z-score = -0.59, R) >droSec1.super_23 36832 120 + 989336 --UCACCUUAGUCCGACGAAUUCGACCCACUGCCACAGAUUGGAGGCAACGCCUCAACAUGUGGCCAUUUA----------ACCCAAAGGCGCAAUUCCUAUAGCCAUAAAUUGAGGUAUUCAGGAACCCUC --..((((((((.(((.....))).......((((((.....(((((...)))))....))))))......----------.......(((............)))....)))))))).............. ( -30.20, z-score = -1.71, R) >consensus __UCUCCUUAACCCGAUGAACUCGACCCACUGCCACAGAUUGGAGGCAAUGCCUCAACAUGUGGCCAUUUA__________ACCCAAAGACGCA_UUCCCAUAGCCAUAAAUCGAGGUAUUCAGG_______ ...........(((((....(((((......((((((.....(((((...)))))....)))))).......................((........))...........)))))....)))))....... (-20.58 = -20.70 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:47:48 2011