| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,135,497 – 20,135,589 |
| Length | 92 |
| Max. P | 0.754540 |
| Location | 20,135,497 – 20,135,589 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 71.81 |
| Shannon entropy | 0.45781 |
| G+C content | 0.53898 |
| Mean single sequence MFE | -32.76 |
| Consensus MFE | -15.86 |
| Energy contribution | -17.78 |
| Covariance contribution | 1.92 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.754540 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20135497 92 - 21146708 AUCUUGUGGCCGACAUUGAGUGCCGCAUGAGUAAUCAUCUGCCGGCACGGG-AAAGCCAAGUGGAAGUGAAGUUCGCCCACUAGCCCAUUUGU----------------------- ....((.(((.........(((((((((((....)))..)).))))))((.-....)).(((((..(((.....)))))))).))))).....----------------------- ( -28.20, z-score = -0.70, R) >droEre2.scaffold_4845 21497663 87 - 22589142 AUCUUGUGGCCGACAUUGACUGGCGGG-GAUUACUCAUCACCC-----------AGCCAAGUGCGAGUGGAGUUCGCCCACUGGCCCA-UUGCGCCAUGU---------------- .....(((((.(.((.(((((((((((-(((.....))).)))-----------.))).)))((.(((((.(....)))))).)).))-.))))))))..---------------- ( -32.20, z-score = -1.01, R) >droYak2.chr2R 20101484 115 - 21139217 AUCUGGUGGCAGACACUGAGUGCCUUG-GAUUACUCAUCAUCCAAUCCAAGCGAAGCCAAGUGCAAGUGGAGUUCGCCCACUAGCCCAGUUCUCCCAUUUCUCCCAGUCCAACAGU ..(((((((.(((.((((..(((.(((-((((...........)))))))))).........((.(((((.(....)))))).)).))))))).)))......))))......... ( -29.30, z-score = -0.87, R) >droSec1.super_23 12259 92 - 989336 AUCUUGUGGCCGACAUUGAGUGGCGGAUGAGUAAUCAUCCGACGGCUCGGG-AAAGCCAAGUGUAAGUGGAGUUCACCCACUAGCCCAUUUGU----------------------- ....((.(((..(((((((((.((((((((....))))))).).))))((.-....)).))))).(((((.(....)))))).))))).....----------------------- ( -34.90, z-score = -2.73, R) >droSim1.chr3L 9522697 92 - 22553184 AUCUUGUGGCCGACAUUGAGUGGCGGAUGAGUAAUCAUCCGCCGGCACGGG-AAAGCCAAGUGUAAGUGGAGUUCACCCACUAGCCCAUUUGU----------------------- .(((((((.((.((.....))(((((((((....)))))))))))))))))-)....((((((..(((((.(....))))))....)))))).----------------------- ( -39.20, z-score = -3.92, R) >consensus AUCUUGUGGCCGACAUUGAGUGGCGGAUGAGUAAUCAUCAGCCGGCACGGG_AAAGCCAAGUGCAAGUGGAGUUCGCCCACUAGCCCAUUUGU_______________________ ......((((.....(((.((..(((((((....)))))))...)).))).....)))).(.((.(((((.(....)))))).)).)............................. (-15.86 = -17.78 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:47:47 2011