| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,129,619 – 20,129,724 |
| Length | 105 |
| Max. P | 0.613611 |
| Location | 20,129,619 – 20,129,724 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 66.51 |
| Shannon entropy | 0.63607 |
| G+C content | 0.55387 |
| Mean single sequence MFE | -32.92 |
| Consensus MFE | -17.52 |
| Energy contribution | -17.92 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.38 |
| Mean z-score | -0.60 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.613611 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20129619 105 - 21146708 CGAGUGAUUAGGGCCACACCGGG---------GCAGCAGUAUCGGUU--ACCAGCC--AAGGCUGCGGCUGAGUGGAGUCCAUUUCGG-GGAUUAAGCCAUUAAUUGCAGCGGAAUCAA ....(((((..(((...((((..---------((....))..)))).--....)))--...(((((((...(((((.((((.......-))))....)))))..)))))))..))))). ( -32.70, z-score = -0.16, R) >droEre2.scaffold_4845 21491757 114 - 22589142 CGAGUGAUUAGGGCCAUUCCAGGGCGGCGGUCGCAGCUGUAUCGGUU--UCCAGCC--AAGGCUGCGGCUGAGUGGAGUCCAUUUCGGAGGAUUAGGUCAUUAAUGGCAGCCAAUCGG- ....(((((.((((((((....(((..(((((((((((.....(((.--....)))--..))))))))))).....(((((........)))))..)))...))))))..))))))).- ( -40.70, z-score = -0.83, R) >droYak2.chr2R 20095432 109 - 21139217 CGAGAGAUUAGGGCCACUCUAGGGCGGCGGGCGCAGCUGUAUCGGUUUCUCCAGCC--AAGGCUGCGGCUGAGUGGAGUCCAUUUCGGGGGAUUAAGUCAUUAAUGGCAGC-------- (((((.......(((.((....)).)))((((.(((((((...((.....))(((.--...))))))))))......)))).))))).........((((....))))...-------- ( -34.40, z-score = 0.85, R) >droSec1.super_23 6418 105 - 989336 CGAGUGAUUAGGGCCACUCCGGG---------GCAGCAGUAUCGGUU--ACCAGCC--AAGGCUGCGGCUGAGUGGAGUCCAUUUCGG-GGAUUAAGUCAUUAAUUGCAGCGGAAUCAG ...(..(((((..((((((...(---------((.(((((...(((.--....)))--...))))).)))))))))(((((.......-)))))......)))))..)........... ( -33.60, z-score = -0.65, R) >droSim1.chr2R 18612232 105 - 19596830 CGAGUGAUUAGGGCCACUCCGGG---------GCAGCAGUAUCGGUU--ACCAGCC--AAGGCUGCGGCUGAGUGGAGUCCAUUUCGG-GGAUUAAGUCAUUAAUUGCAGCGGAAUCAG ...(..(((((..((((((...(---------((.(((((...(((.--....)))--...))))).)))))))))(((((.......-)))))......)))))..)........... ( -33.60, z-score = -0.65, R) >droMoj3.scaffold_6496 25951420 102 - 26866924 --------------CUCCCCACUCGCCGCCCCUUGGCCCU-UCACUC--CCCAACUUAAAAACCAAAACAUUGUGAAAUUCACACACGGCUCUCGAGUUGUGAAUUUUGCUGAUGGCAA --------------..........((((((....)))...-......--.......................(..((((((((((.((.....)).).)))))))))..)....))).. ( -22.50, z-score = -2.19, R) >consensus CGAGUGAUUAGGGCCACUCCAGG_________GCAGCAGUAUCGGUU__ACCAGCC__AAGGCUGCGGCUGAGUGGAGUCCAUUUCGG_GGAUUAAGUCAUUAAUUGCAGCGGAAUCA_ ...(..((((((((...(((............(((((......((((.....)))).....)))))..((((((((...))))).))).)))....))).)))))..)........... (-17.52 = -17.92 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:47:44 2011