| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,116,296 – 20,116,404 |
| Length | 108 |
| Max. P | 0.652315 |
| Location | 20,116,296 – 20,116,404 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 60.00 |
| Shannon entropy | 0.65221 |
| G+C content | 0.41164 |
| Mean single sequence MFE | -24.10 |
| Consensus MFE | -10.49 |
| Energy contribution | -10.30 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.652315 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20116296 108 + 21146708 AUUCGUUCGCUCAAGAACCUAAAAAGGGGAAGAUGCUGGUAGCUGCUCCUUAACCCUUUC--UGGUUCACUUUGUCAAGGAAACGGAGUAUUUCUUCCAACAUAUUCCCC ....((((......)))).......((((((.(((.(((.((.((((((..((((.....--.))))...........(....)))))))...)).))).))).)))))) ( -31.70, z-score = -2.35, R) >droSec1.super_14648 539 104 + 645 AUUCUUUCGCUCAAGAAUCUGAAAAAGG--AGAGGCUAGUAGCUGCUCCUUAAUCCUUUC--UGGUUCAUUUUGUCAAGGAAACGGAGUGCUUCUCCCAACAUAUUCC-- .((((((.((..(((((((.((((((((--((.(((.....))).)))))).....))))--.))))).))..)).))))))..((((.....))))...........-- ( -27.40, z-score = -1.32, R) >droEre2.scaffold_4845 21478857 106 + 22589142 AUUCCUUCUCUCGAGAACCUUGAAAGGA--AGAUGCAAGUAGCUGCUCCUUAACCCUUUC--UGGUUCAUUUUGCCCAGGCAACUGAGUGCUUCCCCCAACAUUGCCUCC ..............(((((..(((((((--((..(((......)))..)))...))))))--.)))))...((((....))))..(((.((.............))))). ( -26.02, z-score = -1.36, R) >droAna3.scaffold_13266 5594829 104 - 19884421 AUUAUUUUAUGUAUAAAUUUCAUUAGAGCCACUAGCUACU-GUCGUAAUUCAAGCUGAAAAGUGAUUAAAAUUGCAAUAAUAACUAAAU-UACAUCUAAGCCCAGG---- ....((..(((((..........((((((.....))).))-)..((((((...(((....)))......))))))..............-)))))..)).......---- ( -11.30, z-score = 1.03, R) >consensus AUUCUUUCGCUCAAGAACCUAAAAAGGG__AGAUGCUAGUAGCUGCUCCUUAACCCUUUC__UGGUUCAUUUUGCCAAGGAAACGGAGUGCUUCUCCCAACAUAGUCC__ ........((((..(((((....((((((.((..((........))..))...))))))....)))))..........(....).))))..................... (-10.49 = -10.30 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:47:39 2011