| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,096,922 – 20,097,003 |
| Length | 81 |
| Max. P | 0.946136 |
| Location | 20,096,922 – 20,097,003 |
|---|---|
| Length | 81 |
| Sequences | 6 |
| Columns | 86 |
| Reading direction | forward |
| Mean pairwise identity | 63.51 |
| Shannon entropy | 0.68296 |
| G+C content | 0.44879 |
| Mean single sequence MFE | -16.73 |
| Consensus MFE | -8.15 |
| Energy contribution | -8.35 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.52 |
| SVM RNA-class probability | 0.946136 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20096922 81 + 21146708 --AACUCGGUAUUUUCUUAAGCUAGGGUAUCUGUUAUUCGCUACUGCGAGUCCCUUUUACCAUUACACCUUUUUCCGCCCACC--- --.....(((...............((((...(..((((((....))))))..)...))))...............)))....--- ( -15.11, z-score = -1.76, R) >droSim1.chr2R 18577961 81 + 19596830 --UACUGGGUAUUUUCUUAUGCUAGGGUAUCUGUUAUUCGCUACUGCGAGUCCCUGUUACCAUUACACCUUUCUCCGGCCACC--- --..((((((((......))))...((((...(..((((((....))))))..)...)))).............)))).....--- ( -18.90, z-score = -1.32, R) >droSec1.super_5 336187 81 + 5866729 --UACUCGGUGUUUUCUUUUGCUAGGGUAUCUGUUAUUCGCUACUGCGAGUCCCUGUUACCAUUACACCUUUCUCCGCCCACC--- --.....(((((........((.((((........((((((....)))))))))))).......)))))..............--- ( -18.76, z-score = -2.59, R) >droYak2.chr2R 20061079 68 + 21139217 AGCUCGCAGUAUUUACUCGAG-UAGGGUAUGUGUUAGUCGCUACAGCGAGUCCCUGUGGCCAUUACACC----------------- .(((((.(((....)))))))-).......((((.(((.(((((((.(....)))))))).))))))).----------------- ( -21.70, z-score = -1.64, R) >droEre2.scaffold_4845 21459477 66 + 22589142 --AGUGCUAUAUUUGCUUGAG-UAGGGUAUGUGUUAUUCGCCACUGCGAGUGCCUGCUACACUUACACC----------------- --...((.......))....(-(((((((.(((.(((((((....))))))).).))))).)))))...----------------- ( -15.50, z-score = 0.22, R) >droAna3.scaffold_13266 5575169 83 - 19884421 --AAUAUUCUAUUUUAUAAAAGUAGGGUAUUUAUGAUUCAUU-CUAUCCCUCGUUGUUAACUUUUCCACUCUGGUUUUUGUCCGGU --((((((((((((.....))))))))))))...........-...........................((((.......)))). ( -10.40, z-score = -0.14, R) >consensus __AACUCGGUAUUUUCUUAAGCUAGGGUAUCUGUUAUUCGCUACUGCGAGUCCCUGUUACCAUUACACCUUU_UCCG_CCACC___ .........................((((...(..((((((....))))))..)...))))......................... ( -8.15 = -8.35 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:47:37 2011