| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,094,776 – 20,094,886 |
| Length | 110 |
| Max. P | 0.936206 |
| Location | 20,094,776 – 20,094,886 |
|---|---|
| Length | 110 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 55.73 |
| Shannon entropy | 0.65972 |
| G+C content | 0.38658 |
| Mean single sequence MFE | -22.83 |
| Consensus MFE | -10.25 |
| Energy contribution | -10.88 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.936206 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20094776 110 + 21146708 AUCAAGACAACUAUAGUUAGAGUGAUUGAGCUGA-GCUCAAUCGAAUUAU-CCAGACCUAAUUGAAAUGAAACUCAAGCUGGAUGGUGUUAAUUU---UGAGCACUUGAUCAAAU----- ((((((.......(((((.((....)).))))).-((((((....(((((-((((......((((........)))).))))))))).......)---))))).)))))).....----- ( -28.70, z-score = -2.43, R) >droPer1.super_34 390686 97 - 916997 ----------------------UUUUUCUGCACCAUUUAAAGGAUUUUGUAAUCCUCCCAAUUAAUGUGUUA-UUAUAUUGGAUGGUAAUCAGUCCCCUAAGAGAGCCCCCAAGUCCUCC ----------------------.....(((.(((((....((((((....)))))).((((((((((...))-))).))))))))))...)))........(((..(......)..))). ( -17.60, z-score = -1.15, R) >droEre2.scaffold_4845 21457304 97 + 22589142 ---------------GCCAGGAAACCACAGUUAAAGCUCGAUCUAAUUAUACCAGACCUAAUUAAAGCGAAGCUCAAGCUGGAUGGUGUUAAUUU---CGAGCACUUGAUCAAAU----- ---------------..((((.(((....)))...((((((.......((((((..((.......(((...)))......)).)))))).....)---))))).)))).......----- ( -21.12, z-score = -1.34, R) >droSec1.super_5 334079 98 + 5866729 ------------AUAGUUGGAGUUAUUGAGCUGC-GCUCAAUCGAAUUAU-CCAGACCCAAUUGAAGUGGAACUCAAGCUGGAUGGUGUUAAUUU---UGAGCACUUGAUCAAAU----- ------------.(((((.((....)).))))).-((((((....(((((-((((......((((........)))).))))))))).......)---)))))............----- ( -23.90, z-score = -0.81, R) >consensus _______________GUUAGAGUUAUUCAGCUGA_GCUCAAUCGAAUUAU_CCAGACCCAAUUAAAGUGAAACUCAAGCUGGAUGGUGUUAAUUU___UGAGCACUUGAUCAAAU_____ ...................................(((((...(((((((((((..((...((((........))))...)).))))).))))))...)))))................. (-10.25 = -10.88 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:47:36 2011