| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,091,916 – 20,092,014 |
| Length | 98 |
| Max. P | 0.748212 |
| Location | 20,091,916 – 20,092,014 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 73.69 |
| Shannon entropy | 0.42057 |
| G+C content | 0.42125 |
| Mean single sequence MFE | -18.05 |
| Consensus MFE | -11.11 |
| Energy contribution | -11.18 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.748212 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20091916 98 - 21146708 GACUCGUUGAAGCAAAAAAGUGUGUCUAUAUAGUGAACUCUUCACCCCAAAAAACUAGUUGCCAAAACUGGUAUUUGCGAACUAUUGUUUCCGAUGCG (..(((..(((((((...(((.(((..((...((((.....))))........(((((((.....)))))))))..))).))).))))))))))..). ( -18.60, z-score = -1.37, R) >droEre2.scaffold_4845 21454375 90 - 22589142 -GAGUAUC--AGUGAAAACGUGUGUCUGUA-AGAGAACUCC---CCUCCAAAAAGUAGUUGCC-AAACUGCAGUUUGCGAACUAUUGUUUCCGAUGCG -..(((((--.((....))...........-.(..(((...---..((((((..((((((...-.))))))..)))).))......)))..)))))). ( -20.10, z-score = -2.03, R) >droYak2.chr2R 20055983 93 - 21139217 -GAAUGUUGAAGCAAAAAACUGUGUCUAUAUAGGGAGCUCC---CCUCCGAAAAGUAGUUGCC-AAACUGCUAUUUGCGAACUAUUGUUUCCGAUGCG -..((((.((.(((......))).)).)))).((((((...---..((((((.(((((((...-.))))))).)))).))......))))))...... ( -21.70, z-score = -2.01, R) >droSec1.super_5 331346 80 - 5866729 AACUCAUUGAAGCAACAAAGUGUCUCC-----------------CACCAAAAAACUACUUGCC-AAACUGGUAUUUGCGAACUAUUGUUUCCGAUGCG ....(((((..((((....(((.....-----------------)))............((((-.....)))).))))((((....)))).))))).. ( -11.80, z-score = -0.50, R) >consensus _AAUCAUUGAAGCAAAAAAGUGUGUCUAUA_AG_GAACUCC___CCCCAAAAAACUAGUUGCC_AAACUGCUAUUUGCGAACUAUUGUUUCCGAUGCG .....................(((((.......................(((.(((((((.....))))))).)))(.((((....)))).)))))). (-11.11 = -11.18 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:47:35 2011