| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,817,964 – 3,818,056 |
| Length | 92 |
| Max. P | 0.922989 |
| Location | 3,817,964 – 3,818,056 |
|---|---|
| Length | 92 |
| Sequences | 11 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 67.58 |
| Shannon entropy | 0.66456 |
| G+C content | 0.51680 |
| Mean single sequence MFE | -28.84 |
| Consensus MFE | -13.88 |
| Energy contribution | -13.86 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.922989 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3817964 92 - 23011544 ----ACGUCCUUGGACCGGCCGAGGUAUGUCCUUGGCCC-GUA-GAACGAUAUGUGGCCAAAGUAAAUGGCAUAUUUUGGCCUCUCCUGGUUAACCGU-------- ----(((.((..(((..((((((((((((((((((((((-(((-......)))).)))).))).....))))))))))))))..))).)).....)))-------- ( -37.10, z-score = -3.40, R) >droPer1.super_1 3889308 89 + 10282868 -----UGUCCUUGGCCAGGGC----CAUGGCCUUGACGACACGCCGACGAUGUGUGGCCAGAGUAAAUGGGAUAUUUUGGCCUCUCCUGGUUAACCGU-------- -----.(((.(((((((((((----....)))))).......))))).)))..(.((((((((((.......)))))))))).)....((....))..-------- ( -31.21, z-score = -0.87, R) >dp4.chr4_group3 6789298 89 + 11692001 -----UGUCCUUGGCCAGGGC----CAUGGCCUUGACUACACGCCGGCGAUAUGUGGCCAGAGUAAAUGGGAUAUUUUGGCCUCUCCUGGUUAACCGU-------- -----.....(((((((((((----(..(((..((....)).)))))).....(.((((((((((.......)))))))))).).)))))))))....-------- ( -32.70, z-score = -1.04, R) >droAna3.scaffold_12916 1822969 84 - 16180835 -----UGGCCUUGGCCUCGCA----UUCGUCCUUGAGCGCAC-----CGAUGUGUGGCCAGAGUAAAUGGGAUAUUUUGGCCUCUCCUGGUUAACCGU-------- -----.((((..((((.((((----((.((.(......).))-----.)))))).))))((((((.......))))))))))......((....))..-------- ( -25.60, z-score = -0.15, R) >droEre2.scaffold_4929 3869218 92 - 26641161 ----UCGUCCUUGGACGGGCCGAGAUUCGUCCUUGAGCC-GAA-GAACGAUGUGUGGCCAAAGUAAAUGGCAUAUUUUGGCCUCUCCUGGUUAACCGU-------- ----.((((....))))(((((((.......)))).)))-...-.(((.(.(.(.((((((((((.......)))))))))).).).).)))......-------- ( -29.80, z-score = -1.28, R) >droYak2.chr2L 3821405 93 - 22324452 ----UCGUCCUUGGACGGGCCGAGAUUCGUCCUUGAGCCUUGA-GAACGAUGUGUGGCCAAAGUAAAUGGCAUAUUUUGGCCUCUCCUGGUUAACCGU-------- ----.((((....))))((((((((.((((.((..(...)..)-).)))).....((((((((((.......))))))))))))))..))))......-------- ( -30.10, z-score = -1.42, R) >droSec1.super_5 1919826 92 - 5866729 ----ACGUCCUUGGACCGGCCGAGAUUCGUCCUUGAGCC-GUA-GAACGAUAUGUGGCCAAAGUAAAUGGCAUAUUUUGGCCUCUCCUGGUUAACCGU-------- ----..(((....)))((((((((.......)))).)))-)..-.(((.(...(.((((((((((.......)))))))))).)...).)))......-------- ( -27.50, z-score = -1.13, R) >droSim1.chr2L 3774199 92 - 22036055 ----AUGUCCUUGGACCGGCCGAGGUUCGUCCUUGAGCC-GUA-GAACGAUAUGUGGCCAAAGUAAAUGGCAUAUUUUGGCCUCUCCUGGUUAACCGU-------- ----..(((....)))(((((((((.....))))).)))-)..-.(((.(...(.((((((((((.......)))))))))).)...).)))......-------- ( -30.80, z-score = -1.90, R) >droVir3.scaffold_13246 2370091 70 - 2672878 --------------UCGACUCGAGUAGCGUGUCC--------------UUGAUGUGGCCAAUGUAAAUGGCAUAUUUUGGCCCAUGUGGGUUAACCGC-------- --------------..(((.((.....)).))).--------------...(((.((((((.(((.......))).)))))))))((((.....))))-------- ( -19.80, z-score = -0.68, R) >droWil1.scaffold_180708 2865881 75 + 12563649 -------------------UGUCCUUGUACGCUUUACGCU----GGGCUGAAUGUGGCCAAAGUAAAUGGCAUAUUUUGGCCUAUGCUGGUUAACCAU-------- -------------------..................(((----((((..((....((((.......))))....))..))))).))(((....))).-------- ( -21.30, z-score = -0.73, R) >droGri2.scaffold_15252 5832987 102 - 17193109 CUGUGCUGACUGCAACAAGUCAAGUAGUGUCCUUGACGGG----CCAAUCGAUGUGGCCAACGUAAAUGGCAUAUUUUGGCCGCUGUGGGUUAACCAUUAAUCCCA ....(((.((.((.....((((((.......)))))).((----((((..((((((.(((.......))))))))))))))))).)).)))............... ( -31.30, z-score = -0.84, R) >consensus _____CGUCCUUGGACAGGCCGAG_UUCGUCCUUGACCC_G_A_GAACGAUAUGUGGCCAAAGUAAAUGGCAUAUUUUGGCCUCUCCUGGUUAACCGU________ .......................................................((((((((((.......))))))))))......((....)).......... (-13.88 = -13.86 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:14:43 2011