| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,052,891 – 20,052,998 |
| Length | 107 |
| Max. P | 0.500000 |
| Location | 20,052,891 – 20,052,998 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 73.50 |
| Shannon entropy | 0.44996 |
| G+C content | 0.43455 |
| Mean single sequence MFE | -28.02 |
| Consensus MFE | -16.17 |
| Energy contribution | -16.93 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2R 20052891 107 - 21146708 GCUGCGAUGCAAAAUAUAUAUGGGCACAUGUUUAUACUGCAAGUUGAUAUCUG-GGCUGUCUGGCACCAGAACAACGCAAAAAGAG--------AAACCAGAGCCAGAUAAGUAGU (((((..((((..(((.(((((....))))).)))..))))......((((((-(.(((((((....))))....(.......)..--------....)))..))))))).))))) ( -28.70, z-score = -1.52, R) >droSec1.super_5 300311 107 - 5866729 GCUGCGAUGCAGAAUAUACAUGGGCACAUGUUUAUACUGCAAGUUGAUAUCUG-GGCUGUCUGGCACCAGAACAACGCAAAAAGAG--------AAACCAGAUCCAGAUAAGUAGU (((((..(((((.(((.(((((....))))).))).)))))......((((((-(((((((((....))))....(.......)..--------....))).)))))))).))))) ( -35.20, z-score = -3.54, R) >droYak2.chr2R 20024860 103 - 21139217 GCUGCGAUGCAGAAUAUA----GGCACAUGUGUAUACUGCAAGUUGAUAUCUG-GGAUGUCUGGCAUCAGAACAACGCAAAAAGAG--------AAACCAGUGCCAGAUAAGUGCU ((.((..(((((..((((----.((....)).)))))))))......((((((-(((((.....)))).......(((........--------......)))))))))).)))). ( -24.94, z-score = 0.08, R) >droEre2.scaffold_4845 21423399 103 - 22589142 GCUGCGAUGCAGAAUACA----GGCAUAUGUUUGUACUGCAAGUUGAUAUCUG-GGAUGUCUGGCAUCAGAACAACGCAAAAAAAG--------AAACCAGUGCCAGAUAAGUACU ..(((..(((((..((((----(((....))))))))))))......((((((-(((((.....)))).......(((........--------......)))))))))).))).. ( -26.44, z-score = -0.99, R) >droAna3.scaffold_13266 5537274 114 + 19884421 GCUAGACUGCGAAACAUAUGGGUAUGUCCAAUUGUCUCGUAGCUCGAUAUCAGUAGAAGUCUGGAAUUGCAGCGAGGGAAACAAAACAAAAUAUAAGCUAUGGCCGGAUAAGUG-- (((.((((((((.(((..((((....))))..))).)))))).)).............((((((......(((...(....)..............)))....)))))).))).-- ( -24.83, z-score = -0.02, R) >consensus GCUGCGAUGCAGAAUAUA___GGGCACAUGUUUAUACUGCAAGUUGAUAUCUG_GGAUGUCUGGCAUCAGAACAACGCAAAAAGAG________AAACCAGAGCCAGAUAAGUACU (((....(((((.(((.(((((....))))).))).)))))................((((((((.....................................)))))))))))... (-16.17 = -16.93 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:47:31 2011