| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,030,363 – 20,030,457 |
| Length | 94 |
| Max. P | 0.694352 |
| Location | 20,030,363 – 20,030,457 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 64.75 |
| Shannon entropy | 0.63887 |
| G+C content | 0.42194 |
| Mean single sequence MFE | -26.48 |
| Consensus MFE | -7.81 |
| Energy contribution | -8.37 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.694352 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20030363 94 - 21146708 -----------------AGAGCUUGAAUGAGUU-CACUUGAAUUCAUUUG---AGUUCCACGCAAAUUGCUCGCUUAAUUCCACAUCGGAAAUGUCGCUUGGGCGAUGCAUUUCG -----------------.(((((..((((((((-(....)))))))))..---)))))..((.((((.((((((((((((((.....)))).......)))))))).)))))))) ( -33.51, z-score = -3.82, R) >droSim1.chr2R_random 2935498 101 - 2996586 ----------UGCACUGGCUGUUCAUUUGAAUU-CACUUGAAUUCAUUUG---AGCUCCACGCAAACUGCUCGUUUAAUUCCACAUCGGAAAUGCCGCUUGGGCGAUGCAUUUCG ----------(((..(((..(((((..((((((-(....)))))))..))---))).))).)))........................((((((((((....)))..))))))). ( -31.40, z-score = -3.07, R) >droSec1.super_5 285559 92 - 5866729 -------------------CGUUCAUUUGAAUU-CACUUGAAUUCAUUUG---AGUUCCACGCAAUUUGCUCGUUUAAUUCCACAUCGGAAAUGCCGCCUGGGCGAUGCAUUUCG -------------------..((((..((((((-(....)))))))..))---))......((.....))..................((((((((((....)))..))))))). ( -24.70, z-score = -2.06, R) >droYak2.chr2R 20009551 102 - 21139217 ----------UGCUCUGACUGCUUGAGCACGACUCAUUUGAAUUCAUUUG---AAUUCGAGGCAAAUUGCUCGUUUAAUUCCACAUGGAAAAUGCCGCAUAUGCGAUGCAUUUCG ----------.((((.........))))((((....(((((((((....)---))))))))((.....))))))....((((....))))((((((((....)))..)))))... ( -26.20, z-score = -1.26, R) >droEre2.scaffold_4845 21408500 112 - 22589142 AAUAUGCUCUGACUGUUUGAGCACGACUCAUUUGGAUUUGAAUUCAUUUG---AAUUGCGCGCAAAUUGCUCGUUUAAUUCCACAUGGGAAAUGCCGCACAGGCGCUGCAUUUGG ....(((((.........)))))...(((((.((((.((((((((....)---))))(((.((.....)).))).))).)))).)))))((((((.((......)).)))))).. ( -31.50, z-score = -1.21, R) >droAna3.scaffold_13266 5521953 78 + 19884421 ---------------------------UUAACA-CAUUGGAGAGCUUUUGUUCAAUUUAAUGUAAAUUGCCUAUUUAAUUCGCCAUCCGAUAUGCC---------AUGCAUUCUG ---------------------------....((-.((((((((((....))))........(..(((((......)))))..)..)))))).))..---------.......... ( -11.60, z-score = -0.39, R) >consensus ___________________AGCUCGAUUGAAUU_CACUUGAAUUCAUUUG___AAUUCCACGCAAAUUGCUCGUUUAAUUCCACAUCGGAAAUGCCGCAUGGGCGAUGCAUUUCG .............................................................((.....))..................((((((((((....)))..))))))). ( -7.81 = -8.37 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:47:30 2011