| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,027,815 – 20,027,909 |
| Length | 94 |
| Max. P | 0.806928 |
| Location | 20,027,815 – 20,027,909 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 68.28 |
| Shannon entropy | 0.56595 |
| G+C content | 0.43949 |
| Mean single sequence MFE | -23.39 |
| Consensus MFE | -11.81 |
| Energy contribution | -12.12 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.806928 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20027815 94 - 21146708 ----GAAGGAUGGUCUUUUU-CUUCGCCGCUGAUAAGGAACGCUAUCUUAUCUGG-AGGGCCAGCACUUCAAACAAUAUGUAUGCCUUGUCAGGCAUAGA ----((((..(((((((((.-..........(((((((.......))))))).))-)))))))...))))..........(((((((....))))))).. ( -26.70, z-score = -1.07, R) >droAna3.scaffold_13230 1036845 84 - 3602488 GAAGGAGAGAUACAAUGUUUAUUUGGAAAACGAUAAGAAAA--UAUCUUAUCUCA-UGGGCUCUCCUUCAAUAUAUGAUCAGUUAGU------------- (((((((((...((..((((.......))))(((((((...--..)))))))...-))..)))))))))..................------------- ( -24.10, z-score = -3.47, R) >droEre2.scaffold_4845 21406035 78 - 22589142 ----GGAGGAUGGUCGAUUU-C-UCACUGCUGAUAAGGAAUGCUAUCUUAUCUGGCAGAGCCAGCACUUGAAACGAAACUUAUG---------------- ----.(((..((((.((...-.-)).((((((((((((.......))))))).))))).))))...)))...............---------------- ( -17.60, z-score = -0.46, R) >droYak2.chr2R 20006942 88 - 21139217 ----GGAGGAUGGCCUGUUU-CUUCACUGCUGAUAAGAAAUGCUAUCUUAUCGG---GGGCCAGCACUUCAAACGAUAUUUAUGCCUUGUUAGACA---- ----((((..((((((((..-....))..(((((((((.......)))))))))---))))))...)))).(((((..........))))).....---- ( -23.80, z-score = -1.21, R) >droSec1.super_5 283137 88 - 5866729 ----GGAGGAUGGUCUUUUU-CUUCACCGCUGAUAAGGAACGCUAUCUUAUCUGG-AGGGCCAGCACUCCAAACGACAUUUAUGACUUGUCAGG------ ----((((..(((((((((.-..........(((((((.......))))))).))-)))))))...))))....((((.........))))...------ ( -24.20, z-score = -1.32, R) >droSim1.chr2R 18544403 90 - 19596830 ----GGAGGAUGGUCUUUUU-CUUCGCCGCUGAUAAGGAACGCUAUCUUAUCUGG-GGGGCCAGCACUCCAAACGAUAUUUAUGACUUGUCAGGCA---- ----((((((........))-))))(((..(((((((......((((.....(((-((........)))))...)))).......)))))))))).---- ( -23.92, z-score = -0.28, R) >consensus ____GGAGGAUGGUCUUUUU_CUUCACCGCUGAUAAGGAACGCUAUCUUAUCUGG_AGGGCCAGCACUCCAAACGAUAUUUAUGACUUGUCAGG______ ....((((..(((((((..............(((((((.......)))))))....)))))))...)))).............................. (-11.81 = -12.12 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:47:28 2011