| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,027,016 – 20,027,136 |
| Length | 120 |
| Max. P | 0.730541 |
| Location | 20,027,016 – 20,027,136 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 96.83 |
| Shannon entropy | 0.05435 |
| G+C content | 0.42833 |
| Mean single sequence MFE | -34.42 |
| Consensus MFE | -32.86 |
| Energy contribution | -32.98 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.730541 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20027016 120 + 21146708 GGAUGGGCAGAGAGAUUGGGAUUGGAAGCGACUGAGUUUUUGAGUUCGACCGGCGAACUAUUUAAGCAACGCUCAUUUGCUCAUUGCAUUUCAAUGUGUUAUCGUUGGCCAUUAAAAAAU .(((((.(((...(((..(.(((((((((((.(((((...((((((((.....)))))).....(((...)))))...))))))))).))))))).)...))).))).)))))....... ( -34.20, z-score = -1.55, R) >droSim1.chr2R 18543620 120 + 19596830 GGAUGGGCAGAGAGAUUGGGAUUGGAAGCGACUGAGUUUUUGAGUUCGACCGGCGAACUAUUUAAGCAGCGCUCGUUUGCUCAUUGCAUUUCAAUGUGUUAUCGUUGGCCAUUAAAAAAU .(((((.(((...(((..(.(((((((((((.(((((...(((((.(.....((...........)).).)))))...))))))))).))))))).)...))).))).)))))....... ( -34.00, z-score = -0.91, R) >droSec1.super_5 282357 120 + 5866729 GGAUGGGCAGAGAGAUUGGGAUUGGAAGCGACUGAGUUUUUGAGUUCGACCGGCGAACUAUUUAAGCAACGCUCAUUUGCUCAUUGCAUUUCAAUGUGUUAUCGUUGGCCAUUAAAAAAU .(((((.(((...(((..(.(((((((((((.(((((...((((((((.....)))))).....(((...)))))...))))))))).))))))).)...))).))).)))))....... ( -34.20, z-score = -1.55, R) >droYak2.chr2R 20006143 120 + 21139217 AGAUGGGCAGAGAGAUUGGGAUUGGAAGCGACUGAGUUUCUGAGUUCGACCGGCGAACUAUUUAAGCAACGCUCAUUUGCUCAUUGCAAUUCAAUGUGUUUUCGUUGGCCAUUAAAAAAU .(((((.(((.((((...((((((.((((((.(((((((((.((((((.....)))))).....)).)).))))).)))))...).)))))).......)))).))).)))))....... ( -33.10, z-score = -0.97, R) >droEre2.scaffold_4845 21405230 120 + 22589142 AAAUGGGCAGAGAGAUUGGGAUUGGAAGCGACUGAGUUUCUGAGUUCGACCGGCGAACUAUUUAAGCAACGCUCAUUUGCUCAUUGCAUUUCAAUGUGUUUUCGCUGGCCAUUAAAAAAU .(((((.(((.((((...(.(((((((((((.(((((...((((((((.....)))))).....(((...)))))...))))))))).))))))).)..)))).))).)))))....... ( -36.60, z-score = -1.99, R) >consensus GGAUGGGCAGAGAGAUUGGGAUUGGAAGCGACUGAGUUUUUGAGUUCGACCGGCGAACUAUUUAAGCAACGCUCAUUUGCUCAUUGCAUUUCAAUGUGUUAUCGUUGGCCAUUAAAAAAU .(((((.(((...(((..(.(((((((((((.(((((...((((((((.....)))))).....(((...)))))...))))))))).))))))).)...))).))).)))))....... (-32.86 = -32.98 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:47:27 2011