| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,005,292 – 20,005,383 |
| Length | 91 |
| Max. P | 0.618638 |
| Location | 20,005,292 – 20,005,383 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 64.88 |
| Shannon entropy | 0.64728 |
| G+C content | 0.39301 |
| Mean single sequence MFE | -21.20 |
| Consensus MFE | -11.02 |
| Energy contribution | -11.68 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.60 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.618638 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20005292 91 + 21146708 ---------UUAUG-UGCAAACUGCAAGGAU---AUGC---UUCCUUGCAAGAUGUCGUCGCUCAGUGUAUUUUUUAUGCUGAUGACCACGAAAUGGGAAGCGAUUU ---------.....-(((....((((((((.---....---.))))))))...(((.((((.((((((((.....)))))))))))).))).........))).... ( -28.70, z-score = -2.67, R) >droSim1.chr2R_random 2948951 91 + 2996586 ---------UAAUG-UAAAAACUGCAAGGAU---GUGC---CUCCUUUUAAGAUGUCUUCGCUCAGUGUAUUUUUUAUGCUGAUGGCCACAAAGUGGGAAGCGAUUU ---------.....-......((..(((((.---....---.)))))...))......((((((((((((.....))))))))...((((...))))...))))... ( -20.60, z-score = -0.44, R) >droSec1.super_5 260810 91 + 5866729 ---------UAAUG-UAAAAACUUCAAGGAU---AUGC---CUCCUUUUAAGAUGUCUUCGCUCAGUGUAUUUUUUAUGCUGAUGGCCACAAAGUGGGAAGCGAUUU ---------.....-......(((.(((((.---....---.)))))..)))......((((((((((((.....))))))))...((((...))))...))))... ( -20.40, z-score = -0.89, R) >droYak2.chr2R 19984079 104 + 21139217 UUACAUUGAUAGUAAUGAUUUCUGUAAGGACUACAUGC---CUCCUCGUAAAGCGUCUUCGCUCAGUGUACUUUUUAUGCUGAUGGCCACAAAGUGGGAAGCGUUUU ...(((((....))))).....((..((((........---.))))..))(((((.((((..((((((((.....))))))))...((((...))))))))))))). ( -22.60, z-score = 0.16, R) >droEre2.scaffold_4845 21380747 105 + 22589142 UUGCACAUAUAAUGUUUAUUUCUGUAAGGACUUCAAGCACUUGCAACAUAACAUGUCUUCGCUCAGUGUA--UGUUAUGCUGAUGGCCACAAAGUGGAAAGCGUUUU ...........(((((......((((((..(.....)..))))))....))))).....(((((((((((--...))))))))...((((...))))...))).... ( -20.10, z-score = 1.07, R) >droAna3.scaffold_13266 5489640 69 - 19884421 --------------------------------------UAAUGGAAAAGGAUACAAUUUCUUUCAGUGUCCCUUUUAUGCUGAUGGCCACAAAGUGGAUACCGUUUU --------------------------------------.((((((((.(((......))))))).((((((((((...((.....))...)))).)))))))))).. ( -14.80, z-score = -0.82, R) >consensus _________UAAUG_UAAAAACUGCAAGGAU___AUGC___CUCCUUAUAAGAUGUCUUCGCUCAGUGUAUUUUUUAUGCUGAUGGCCACAAAGUGGGAAGCGAUUU ...........................................................(((((((((((.....))))))))...((((...))))...))).... (-11.02 = -11.68 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:47:26 2011