| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,001,988 – 20,002,093 |
| Length | 105 |
| Max. P | 0.647652 |
| Location | 20,001,988 – 20,002,093 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 67.57 |
| Shannon entropy | 0.54059 |
| G+C content | 0.28539 |
| Mean single sequence MFE | -17.46 |
| Consensus MFE | -7.79 |
| Energy contribution | -9.47 |
| Covariance contribution | 1.69 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.647652 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20001988 105 + 21146708 ACCUAUCAUGCUAAAUUGUCAUUGCAGUAGUUGUUUCCUUUUUUCCUAACCAAACAUAUUAAAUAGGAAAGGAAUAUAUUGCAUCAAACAAUUAUGUAUCUUAAU ...((..((((..((((((...(((((((.....((((((...(((((...............)))))))))))..)))))))....))))))..))))..)).. ( -21.66, z-score = -3.12, R) >droSec1.super_5 257494 104 + 5866729 ACCUAUCAUGGUAAAUUGUCAUUGCAGUAGUGGUUUCCUUUUUACG-AAUCGAACAUAUUAAAUAGGAAAGGAACAUAUUUCAUCAAACAAUUAUAUGCCAUAAA .......((((((((((((...((.((((...(((.(((((((...-..................)))))))))).)))).))....))))))...))))))... ( -17.10, z-score = -0.70, R) >droSim1.chr2R_random 2929842 105 + 2996586 AACGAUCAUGCUAAAUUGUCAUUGCAGUGUUGGUUUCCUUUUCUACGAAUCGAACAUAUUAAAUAGGAAAGGAACAUAUUGCAUCAAACAAUUAUAUGCCAUAAA .........((..((((((...((((((((....(((((((((((..(((.......)))...))))))))))).))))))))....))))))....))...... ( -22.50, z-score = -2.14, R) >droWil1.scaffold_180700 5106522 83 + 6630534 ------CGUGAUAGAACAAUAUUACAGUGCUUGUGCAACUUUA----AACCGAAC----UAAAUU--AAAAUAAAAUAUUGC-UUUACUAGUUUUAAAAU----- ------.((((((......))))))..(((....)))......----....((((----((...(--(((.(((....))).-)))).))))))......----- ( -8.60, z-score = 0.15, R) >consensus ACCUAUCAUGCUAAAUUGUCAUUGCAGUAGUGGUUUCCUUUUUUCC_AACCGAACAUAUUAAAUAGGAAAGGAACAUAUUGCAUCAAACAAUUAUAUACCAUAAA .............((((((...(((((((.....(((((((((......................)))))))))..)))))))....))))))............ ( -7.79 = -9.47 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:47:25 2011