| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,998,323 – 19,998,417 |
| Length | 94 |
| Max. P | 0.555929 |
| Location | 19,998,323 – 19,998,417 |
|---|---|
| Length | 94 |
| Sequences | 7 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 69.51 |
| Shannon entropy | 0.60803 |
| G+C content | 0.32534 |
| Mean single sequence MFE | -17.27 |
| Consensus MFE | -8.29 |
| Energy contribution | -8.70 |
| Covariance contribution | 0.41 |
| Combinations/Pair | 1.47 |
| Mean z-score | -0.89 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.555929 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19998323 94 + 21146708 AUAUCGUAUGUGUUUUCUAUCCAAUAACAUACCUCUUGUUCAAAUAUUUAGCAUUCAAAUCCGAUGAUGCGGGGAUGUUGAAUAAUGUUUGAUU .....((((((...............)))))).......(((((((((((((((((....(((......))))))))))))...)))))))).. ( -19.76, z-score = -1.24, R) >droVir3.scaffold_12875 12146008 76 + 20611582 --UUAAAACUUGG----UUAUGAAUAAAUUACCUUUUAUUAGAGUAGAUUUUAUUUAUAUCCGAGCUUGAAGGUACACGGUC------------ --......(((((----.((((((((((((((((......)).))))..)))))))))).))))).................------------ ( -15.10, z-score = -1.75, R) >droAna3.scaffold_13266 5481606 85 - 19884421 ----CCAGCCAGU-----ACUAGAAUACUCACCUUUUGUUUAAAUAUUUUGCACUAAGAUCGGAUGAUGCCGUUAGAUUGAACAGGGUUUGAUU ----(.(((((((-----(......))))......((((((((..((((((...))))))(((......))).....)))))))))))).)... ( -10.00, z-score = 1.65, R) >droEre2.scaffold_4845 21373617 89 + 22589142 AUAUUGAAUGUGU----UAUCUUA-ACCAUACCUCUUAUUUAAAUAUUUAGCAUUCAAAUCCGAUGACGCGGGGAUGUUGAAUAAAGUUUGAUU .......(((.((----((...))-)))))...((..((((...((((((((((((....(((......)))))))))))))))))))..)).. ( -15.10, z-score = -0.42, R) >droYak2.chr2R 19977134 90 + 21139217 AUAUUGAAAGUAU----UAUCUAAUACCAUACCUCUUAUUUAAAUAUUUAGCAUUCAAAUCCGAUGAUGCGGGGAUGUUGAAUAGAGUUUGAUU .........((((----(....)))))......((..((((...((((((((((((....(((......)))))))))))))))))))..)).. ( -15.50, z-score = -0.48, R) >droSec1.super_5 253726 90 + 5866729 AUAUCGAGUGUGU----UAUCCAAUAACAUACCUCUUAUUCAAGUAUUUAGCAUUCAAAUCCGAUGAUGCGGGGAUGUUGAAUAAUGUUUGAUU .....((((((((----(((...)))))))).)))....(((((((((((((((((....(((......)))))))))))))))...))))).. ( -23.00, z-score = -2.33, R) >droSim1.chr2R_random 2926349 90 + 2996586 ACAUCGAAUGUGU----UAUCCAAUAACAUACCUCUUGUUCAAGUAUUUAGCAUUCAAAUCCGAUGAUGCGGGGAUGUUGAAUAGCGUUUGAUU ..(((((((((((----(((...)))))................((((((((((((....(((......)))))))))))))))))))))))). ( -22.40, z-score = -1.68, R) >consensus AUAUCGAAUGUGU____UAUCCAAUAACAUACCUCUUAUUCAAAUAUUUAGCAUUCAAAUCCGAUGAUGCGGGGAUGUUGAAUAAAGUUUGAUU ............................................((((((((((((....(((......))))))))))))))).......... ( -8.29 = -8.70 + 0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:47:25 2011