Locus 539

Sequence ID dm3.chr2L
Location 3,799,370 – 3,799,462
Length 92
Max. P 0.588810
window721

overview

Window 1

Location 3,799,370 – 3,799,462
Length 92
Sequences 13
Columns 94
Reading direction forward
Mean pairwise identity 63.92
Shannon entropy 0.83647
G+C content 0.42852
Mean single sequence MFE -18.10
Consensus MFE -8.14
Energy contribution -8.35
Covariance contribution 0.22
Combinations/Pair 1.43
Mean z-score -0.28
Structure conservation index 0.45
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.20
SVM RNA-class probability 0.588810
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 3799370 92 + 23011544
CACCUGCACUUCAGCUCUGAAUUUGGAUGUGCAGAAUAUGAAUUCGUUGUAUUUUAUGGUAAGGUCUUUAAGAAACAUUACUAUA-CCCAUUC-
...(((((((((((........))))).))))))((((..(.....)..)))).((((((((..((.....))....))))))))-.......- ( -18.60, z-score =  -0.93, R)
>droSim1.chr2L 3755398 91 + 22036055
CACCUGCGCUUCAGCUCUGAAUUUGGAUGUGCAGAACAUGAAUUCGUUGUAUUUUAUGGUAAGGUCUAUAAGAAACAUUACUAU--CCAAUUC-
...(((((((((((........))))).)))))).............(((.((((((((......)))))))).))).......--.......- ( -18.60, z-score =  -0.73, R)
>droSec1.super_5 1901453 93 + 5866729
CACCUGCGCUUCAGCUCUGAAUUUGGAUGUGCAGAACAUGAAUUCGUUGUAUUUUAUGGUAAGGUCUAUAAGAAACAUAACUAUCCCCCAUUC-
...(((((((((((........))))).)))))).............(((.((((((((......)))))))).)))................- ( -18.60, z-score =  -0.59, R)
>droYak2.chr2L 3801072 90 + 22324452
CACCUGCACGUCGGCUCUGAACUUGGAUGUGCAGAACAUGAAUUCAUUGUAUUUUAUGGUG-GGUCUAUGAAAAACGUAUCUAC--CCAAUUC-
...(((((((((.............)))))))))..((((((..........)))))).((-(((.((((.....))))...))--)))....- ( -23.02, z-score =  -1.61, R)
>droEre2.scaffold_4929 3844846 90 + 26641161
CACCUGCACUUCGGCUCUGAAUUUGGAUGUGCAGAACAUGAACUCGUUGUACUUCAUGGUA-GGUCUAUAACAGAGAUUUCUUU--CCAAUUU-
...(((((((((((........))))).))))))........(((((((((..((......-))..)))))).)))........--.......- ( -18.60, z-score =  -0.08, R)
>droAna3.scaffold_12916 1805039 91 + 16180835
CACCUGCGCCUCGGCUCUGAAUUUGGACGUGCAGAACAUGAAUUCGAUGUACUUUAUGGUG-AGUUUGUGGUUGAGUUAGGAAUUUCCUUUU--
..((((...(((((((..(((((((..((((.((.((((.......)))).)).)))).))-)))))..))))))).))))...........-- ( -20.60, z-score =   0.06, R)
>dp4.chr4_group3 6765826 87 - 11692001
CACCUGCGCCUCGGCCCUGAAUUUGGAUGUGCAGAACAUGAACUCCAUGUACUUUAUGGUG-AGU--AAAACUAGUCACUGAACCAGCUC----
...((((((.((.............)).)))))).(((((.....))))).......((((-(.(--(....)).)))))..........---- ( -18.72, z-score =  -0.11, R)
>droPer1.super_1 3866044 87 - 10282868
CACCUGCGCCUCGGCCCUGAAUUUGGAUGUGCAGAACAUGAACUCCAUGUACUUUAUGGUG-AGU--AAAACUAGUCACUGAACCAGCUC----
...((((((.((.............)).)))))).(((((.....))))).......((((-(.(--(....)).)))))..........---- ( -18.72, z-score =  -0.11, R)
>droVir3.scaffold_12963 5299161 92 - 20206255
CACCUGCGCCUCGGCGCUCAACUUGGAUGUGCAGAACAUGAACUCCUUAUAUUUUAUGGUC-GGUU-AACCUCAACCUAUCAGCUUAGAUAUGC
.....((((....)))).......(((.((.((.....)).))))).(((((((..((((.-((((-......)))).))))....))))))). ( -20.80, z-score =  -0.80, R)
>droMoj3.scaffold_6500 14491261 86 - 32352404
CACCUGCGCCUCAGCGCUCAAUCUGGACGUGCAGAACAUGAACUCGCUCUACUUUAUGGUA-AGCU-A-CCCCAAAAAAU--GCAUUGUUA---
.....((((....))))........((((((((............(((.((((....))))-))).-.-..........)--))).)))).--- ( -16.85, z-score =  -0.20, R)
>droGri2.scaffold_15126 4470428 93 + 8399593
AACGUGCACCUCGGCGCUCAAUUUGGAUGUGCAGAACAUGAAUUCACUUUACUUUAUGGUU-AGUCUUAAAUCUUAAUCUAAUUUGAUUUAUCG
...((((......))))((((.((((((.....(((......)))(((..(((....))).-)))...........)))))).))))....... ( -13.50, z-score =   0.16, R)
>anoGam1.chr3R 27765605 90 + 53272125
UUCUUGCGAGUCUGCCAUCAGGAUCGAUGUUCAGAACAUGCAAUCAUUACAUUUCAGGGUA-GGUCCUCUUCAACGCCAUUUAUUUCUCCG---
...(((((..((((.((((......))))..))))...))))).............((((.-((......)).)).)).............--- ( -14.50, z-score =   0.55, R)
>triCas2.ChLG4 2347829 85 + 13894384
GACUUGUGAUGCCGCCGUGGAGAUCGAUAUACAAAACACCCAGACUAUUUUUUUCAGAGUAAGGAAAGCACACCGCGAGUUUGGA---------
((((((((.(((..(((((.................)))......(((((......))))).))...)))...))))))))....--------- ( -14.23, z-score =   0.73, R)
>consensus
CACCUGCGCCUCGGCUCUGAAUUUGGAUGUGCAGAACAUGAAUUCGUUGUAUUUUAUGGUA_GGUCUAUAACAAACAUAUCUAUU_CCUAUU__
...((((((.((.............)).))))))..((((((..........)))))).................................... ( -8.14 =  -8.35 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:14:42 2011