| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,997,038 – 19,997,146 |
| Length | 108 |
| Max. P | 0.591067 |
| Location | 19,997,038 – 19,997,146 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 135 |
| Reading direction | forward |
| Mean pairwise identity | 80.48 |
| Shannon entropy | 0.31191 |
| G+C content | 0.51323 |
| Mean single sequence MFE | -30.60 |
| Consensus MFE | -23.18 |
| Energy contribution | -22.82 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.591067 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19997038 108 + 21146708 GCUUCGUGGGUCCAUUAUUUGAUUUAUUCGACG---CGUUUGGCGACAUAUUUG------------------------CACUUCCUGGCUUGCUUCCUUCCUCCGACGGCGAGCCUGGCUUACUUAAAUCGCCUG ((.(((((((((........))))))..))).)---)....(((((((....))------------------------.....((.((((((((((........)).)))))))).))..........))))).. ( -28.30, z-score = -1.19, R) >droEre2.scaffold_4845 21372315 132 + 22589142 GCUUUGUGGGUCCAUUACUUGAUUUGUUCGACU---CAGCUGGCGACAUAUGUGGUUCUACUUCAAUCUUAAUUUUAGCAUUUCCUGGCUUGCUCCCAUCCUCGGACGGUGAGCCUGGCUUACUCAAAUCGCCUG ......((((((....((.......))..))))---))...(((((....((.((.....)).))..................((.((((..((.((......))..))..)))).))..........))))).. ( -29.10, z-score = 0.43, R) >droYak2.chr2R 19975826 135 + 21139217 GCUUCGUGGGUCCACUAUUUGAUUUAUUCGACGACUCCUCUGGCGACAUAUUUGGAUCUACCUCAAUCUUAAUUUUUGCACUUCCUGGCUUGCUUCCAUCCUCGGACGGCGAGCCUGGCUUACUCAAGUCGCCUG .....(((((((((....((((.....)))).........((....))....)))))))))................((.......(((((((((((......))).)))))))).(((((....)))))))... ( -35.90, z-score = -2.13, R) >droSec1.super_5 252439 108 + 5866729 GCUUCGUGGGUCCAUUACUUGAUGUACUCGACG---CUUCUGGCGACAUAUUUG------------------------CACUUCCUGGCUUGCUCCCUUCCUCCGACGGCGAGCCUGGCUUACUCAAAUCGCCUG ((.(((..(((.((((....)))).)))))).)---)....(((((....((((------------------------.....((.((((((((..(.......)..)))))))).))......))))))))).. ( -30.10, z-score = -1.70, R) >droSim1.chr2R_random 2925057 108 + 2996586 GCUUCGUGGGUCCAUUAUUUGAUUUACUCGACG---CUUCUGGCGACAUAUUUG------------------------CACUUCCUGGCUUGCUUCCUUCCUCCGACGGCGAGCCUGGCUUACUCAAAUCGCCUG ((.(((((((((........)))))))..)).)---)....(((((....((((------------------------.....((.((((((((((........)).)))))))).))......))))))))).. ( -29.60, z-score = -2.03, R) >consensus GCUUCGUGGGUCCAUUAUUUGAUUUAUUCGACG___CUUCUGGCGACAUAUUUG________________________CACUUCCUGGCUUGCUUCCUUCCUCCGACGGCGAGCCUGGCUUACUCAAAUCGCCUG .....(((((((........)))))))..............(((((((....)).............................((.((((((((....((....)).)))))))).))..........))))).. (-23.18 = -22.82 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:47:24 2011