| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,995,720 – 19,995,770 |
| Length | 50 |
| Max. P | 0.954696 |
| Location | 19,995,720 – 19,995,770 |
|---|---|
| Length | 50 |
| Sequences | 6 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 76.40 |
| Shannon entropy | 0.44467 |
| G+C content | 0.49000 |
| Mean single sequence MFE | -12.23 |
| Consensus MFE | -10.38 |
| Energy contribution | -9.58 |
| Covariance contribution | -0.80 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.61 |
| SVM RNA-class probability | 0.954696 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19995720 50 + 21146708 GGAUAUGUGUGCUGAAAGGGCUUGGGCUGGAAGUACGAACUAUCCGCUGG (((((..((((((.....(((....)))...))))))...)))))..... ( -14.50, z-score = -1.86, R) >droSim1.chrU 4785416 50 - 15797150 GGAUAUGAGUGCUGAAAGAGCUUGAGCGGAAGUAACGAACUAUCCGCGAG ..........(((.....)))....((((((((.....))).)))))... ( -11.50, z-score = -1.43, R) >droSec1.super_5 251122 50 + 5866729 GGAUAUGUGUGCUGAAAGGGCUUGGGCUGGAAGUACGAACUAUCCGCUGG (((((..((((((.....(((....)))...))))))...)))))..... ( -14.50, z-score = -1.86, R) >droYak2.chr2R 19974507 50 + 21139217 GGAUAUGUGUGCUGAAAGGGCUUAGGCUGGAAGUAUGAACUAUCCGCUGG (((((..((((((.....(((....)))...))))))...)))))..... ( -12.00, z-score = -1.02, R) >droEre2.scaffold_4845 21370998 50 + 22589142 GGAUAUGUGUGCUGAAAGGGUUUAGGCUGGAAGUACGAGCUAUCCGCUGG (((((..((((((...((........))...))))))...)))))..... ( -13.10, z-score = -1.06, R) >droGri2.scaffold_15245 11980404 50 + 18325388 GGGAACGAAUGUUGAACAUUUUUACUUGCAAAAUAUGAGUUUUCCGCUAA (..(((..(((((...((........))...)))))..)))..)...... ( -7.80, z-score = -0.81, R) >consensus GGAUAUGUGUGCUGAAAGGGCUUAGGCUGGAAGUACGAACUAUCCGCUGG (((((..((((((...((........))...))))))...)))))..... (-10.38 = -9.58 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:47:23 2011