| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,951,368 – 19,951,462 |
| Length | 94 |
| Max. P | 0.903292 |
| Location | 19,951,368 – 19,951,462 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 64.97 |
| Shannon entropy | 0.56629 |
| G+C content | 0.42466 |
| Mean single sequence MFE | -30.47 |
| Consensus MFE | -16.72 |
| Energy contribution | -15.17 |
| Covariance contribution | -1.55 |
| Combinations/Pair | 1.54 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.903292 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19951368 94 + 21146708 -------------------CACAUAUAGAUUCAUAAAUUCACUGGCGUCUGUGCAUCCAA-AUGUGCAUAUUUGAGCAUAGGCGUGGGUGUUGCUGCAAGGAUUAAUGGCCAAG -------------------...........((((.((((((((.((((((((((...(((-(((....)))))).)))))))))).)))((....))..))))).))))..... ( -26.80, z-score = -0.80, R) >droSim1.chr2R 18498011 94 + 19596830 -------------------CACAUAUAGAUUCAUAAAUUCACUGGCGUCUGUGCAUCCAA-AUGUGCAUAUUUGAGCAUAGGCGUGGGUGUUGCUGCAAGGAUUAAUGGCCAAG -------------------...........((((.((((((((.((((((((((...(((-(((....)))))).)))))))))).)))((....))..))))).))))..... ( -26.80, z-score = -0.80, R) >droSec1.super_5 204716 94 + 5866729 -------------------CACAUAUAGAUUCAUAAAUUCACUGGCGUCUGUGCAUCCAA-AUGUGCAUAUUUGAGCAUAGGUGUGGGUGUUGCUGCAAGGAUUAAUGGCCAAG -------------------...........((((.((((((((.((..((((((...(((-(((....)))))).))))))..)).)))((....))..))))).))))..... ( -22.80, z-score = 0.44, R) >droEre2.scaffold_4845 21326650 94 + 22589142 -------------------CACAUAUAGAUUCAUAAAUUCACCAGCGUCUGUGCAUCCAA-AUGUGAAUAUUUGAGCAUAGGCGUGGGUGUUGCUGCAAGGAUUAAUGGCCAAG -------------------...........((((.((((((((.((((((((((...(((-(((....)))))).)))))))))).)))((....))..))))).))))..... ( -26.50, z-score = -1.36, R) >dp4.chr3 7641319 114 + 19779522 UAUGUAAUUCAUGUAUAUCCGUGCCCACGGGUGUGUAUGUACAUAUUUACAUGCAUAUGAUAUGUGCACAUUUAUGCAUACUCGUAGGCGUGGGUGUUAAAUCGAGAGGACAGG ..(((..(((((..(((((((((((.(((((((((((((((((((((...........))))))))))......))))))))))).)))))))))))...)).)))...))).. ( -40.40, z-score = -2.65, R) >droPer1.super_2 7840958 114 + 9036312 UAUGUAAUUCAUGUAUAUCCGUGCCCACGGGUGUGUAUGUAGAUAUUUACAUGCAUAUGAUAUGUGCACAUUUAUGCAUACUCGUAGGCGUGGGUGUUAAAUCGAGAGGACAGG ..(((..(((((..(((((((((((.((((((((((((((((....)))).(((((((...))))))).....)))))))))))).)))))))))))...)).)))...))).. ( -39.50, z-score = -2.64, R) >consensus ___________________CACAUAUAGAUUCAUAAAUUCACUGGCGUCUGUGCAUCCAA_AUGUGCAUAUUUGAGCAUAGGCGUGGGUGUUGCUGCAAGGAUUAAUGGCCAAG .......................(((.(((((.......((((.((((((((((...(((.(((....)))))).)))))))))).)))).........))))).)))...... (-16.72 = -15.17 + -1.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:47:16 2011