| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,947,114 – 19,947,222 |
| Length | 108 |
| Max. P | 0.745856 |
| Location | 19,947,114 – 19,947,222 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 91.67 |
| Shannon entropy | 0.14825 |
| G+C content | 0.46296 |
| Mean single sequence MFE | -31.50 |
| Consensus MFE | -25.16 |
| Energy contribution | -25.88 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.745856 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19947114 108 + 21146708 GAAUGGCGUCACUUAGCAUUGUGAUGGUAAACGGCGGGAACCAGAUGGGGUGACGCUACCGGUUUUGAAUGGGUACAAGAUGAACUUGUAUUAUUGACAACGCUACUG ...((.((((((........)))))).))...((((((((((.(.((((....).)))).)))))).....((((((((.....))))))))........)))).... ( -29.90, z-score = -1.59, R) >droSim1.chr2R 18493855 108 + 19596830 GUAUGGCGUCACUUAGCAUGGUGAUGGUAAACGGCGGGAACCAGGUGGGGUGACGCUACCGGUUUUGAAUGGGUUCAAGAAGAACUUGUAUUAUUGACAAUGCUACUG ((.((.(((((((......))))))).)).))((((((((((.((((((....).)))))))))))..(..(((((.....)))))..)...........)))).... ( -36.40, z-score = -2.92, R) >droSec1.super_5 200540 108 + 5866729 GUAUGGCGUCACUUAGCAUGGUGAUGGUAAACGGCGGGAACCAGGUGGGGUGACGCUACCGGUUUUGAAUGGGUUCAAGAAGAACUUGUAUUAUUGACAAUGCUAGUG ((.((.(((((((......))))))).)).))((((((((((.((((((....).)))))))))))..(..(((((.....)))))..)...........)))).... ( -36.40, z-score = -3.00, R) >droYak2.chr2R 19925949 108 + 21139217 GAAUGGCGUCACUUAGCAUGAAGAUGGUAAACGGCGGGAACCAGGUGGGGUGACGCUACCGGUUUUGAAUGGGUUUAAGAAAAACUUGUAUUAUUGACAAUGCUACUG .............((((((...((((((........((((((.((((((....).)))))))))))..(..(((((.....)))))..)))))))....))))))... ( -28.70, z-score = -1.55, R) >droEre2.scaffold_4845 21322383 108 + 22589142 GAAUGGCGUCGCUUAGCAUGAAGAUGGUAAACGACGGGAACCAGAUGAGGUGACGCUACCGGUUUUAAAUGGGUUCAAGAAUAACUUGUACUAUUGACAAUCCUUAUA ...((((((((((...(((.....((((...(....)..)))).))).))))))))))..((.....(((((...((((.....))))..)))))......))..... ( -26.10, z-score = -0.95, R) >consensus GAAUGGCGUCACUUAGCAUGGUGAUGGUAAACGGCGGGAACCAGGUGGGGUGACGCUACCGGUUUUGAAUGGGUUCAAGAAGAACUUGUAUUAUUGACAAUGCUACUG ...(((((((((((....((((..(.((.....)).)..))))....)))))))))))...(((.((((..(((((.....)))))..).)))..))).......... (-25.16 = -25.88 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:47:15 2011