| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,922,082 – 19,922,178 |
| Length | 96 |
| Max. P | 0.566986 |
| Location | 19,922,082 – 19,922,178 |
|---|---|
| Length | 96 |
| Sequences | 7 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 70.43 |
| Shannon entropy | 0.55602 |
| G+C content | 0.40374 |
| Mean single sequence MFE | -25.29 |
| Consensus MFE | -12.79 |
| Energy contribution | -14.04 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.66 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.566986 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19922082 96 + 21146708 UCUGCUUAUUUCCAAGGGCUUGUGAAAAUGUGCUUCGCUAUGCAGUUAUAUAUGCACAU----------UCCUGUGUAUGCAUGUGUGUGCUGCAGUGUGCGUUUC---- ...((...(((((((....))).))))....))..(((..(((((((((((((((((((----------....))))..))))))))).))))))....)))....---- ( -27.70, z-score = -1.08, R) >droPer1.super_2 7804827 99 + 9036312 CCAAUUUAACU-CAGUUGUCGGCCCAAGUGUACAUGCGGACAUACAUGCAUAAUAACAU----------AUUUAUCUCUGCUGAAGUAUGCCGAAAUCUAAAACACUUAU .(((((.....-.))))).......((((((.....(((.(((((..(((..((((...----------..))))...)))....)))))))).........)))))).. ( -15.54, z-score = -0.02, R) >droAna3.scaffold_13266 5793098 105 + 19884421 UAGUUUAAAUUUCAAGAACUUGCGAAAAUGUGUUCUA-UAUGCACUUAUAUAUGUACAUCUGUCGACAUUCCUGUGUACAUGCGUGUGCGUUAAAAUGUAUGCGUU---- .(((((.........))))).(((...(((..((.((-.((((((.....(((((((((..(........)..)))))))))...)))))))).))..))).))).---- ( -20.40, z-score = 0.14, R) >droEre2.scaffold_4845 21297522 96 + 22589142 UCUGCUUAUUUUCAAGGGCUUGUGAAAAUGUGCUUCGCUAUGCAGUUAUAUAUGCACAU----------UCCUGUGUAUGCAUAUGUGUGCUGCAGUGUGCGUUUC---- ...((.((((((((........)))))))).))..(((..(((((((((((((((((((----------....))))..))))))))).))))))....)))....---- ( -31.00, z-score = -2.40, R) >droYak2.chr2R 19900828 92 + 21139217 UAUGCUUAUUUUCAAGGGCUUGUGAAAAUGUGCUUUGCUAUGCAGUUAUAUAUGCACAU----------UCCUGUGUAUGCAUAUGUGUGCUGCAGUUUGUC-------- ...((.((((((((........)))))))).)).......(((((((((((((((((((----------....))))..))))))))).)))))).......-------- ( -27.00, z-score = -1.53, R) >droSec1.super_5 175268 96 + 5866729 UCUGCUUAUUUCCAAGGGCUUGUGAAAAUGUGCUUCGCUAUGCAGUUAUAUAUGCACAU----------UCCUGUGUAUGCAUGUGUGUGCUGCAGUGUGCGUUUC---- ...((...(((((((....))).))))....))..(((..(((((((((((((((((((----------....))))..))))))))).))))))....)))....---- ( -27.70, z-score = -1.08, R) >droSim1.chr2R 18458741 96 + 19596830 UCUGCUUAUUUCCAAGGGCUUGUGAAAAUGUGCUUCGCUAUGCAGUUAUAUAUGCACAU----------UCCUGUGUAUGCAUGUGUGUGCUGCAGUGUGCGUUUC---- ...((...(((((((....))).))))....))..(((..(((((((((((((((((((----------....))))..))))))))).))))))....)))....---- ( -27.70, z-score = -1.08, R) >consensus UCUGCUUAUUUCCAAGGGCUUGUGAAAAUGUGCUUCGCUAUGCAGUUAUAUAUGCACAU__________UCCUGUGUAUGCAUGUGUGUGCUGCAGUGUGCGUUUC____ ...............((((.(((....))).))))(((..(((((((((((((((((((..............))))..))))))))).))))))....)))........ (-12.79 = -14.04 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:47:10 2011