| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,915,108 – 19,915,230 |
| Length | 122 |
| Max. P | 0.546991 |
| Location | 19,915,108 – 19,915,230 |
|---|---|
| Length | 122 |
| Sequences | 5 |
| Columns | 124 |
| Reading direction | reverse |
| Mean pairwise identity | 82.44 |
| Shannon entropy | 0.31058 |
| G+C content | 0.34787 |
| Mean single sequence MFE | -28.05 |
| Consensus MFE | -18.84 |
| Energy contribution | -18.96 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.546991 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19915108 122 - 21146708 UAAGCCGCUUAUUAGGGUCUAGUCGUAAUCUUGUGAAU-GUUUUUUCUAAGACCUUAAUUGUGCUUAGAUUAAUCAUCGUUCUAGUAGCAGGAGGCUAGAC-UUAAGUGCUACAUUUGUCAUAG ..(((.(((((....(((((((((....((((((((((-(.((..((((((..(......)..))))))..))....))))).....))))))))))))))-)))))))))............. ( -32.20, z-score = -1.78, R) >droSim1.chr2R 18481650 122 - 19596830 UAAGCCGCUUAUUAGGGUCUAGUCGUAAUCUUGUGAAU-UUUUUUUCUAAGACCUUAAUUGUGCUUAGAUUAAUCAUCGUUCUAGUAGCAGGAGGCUAGAC-UUAAGUGCUACAUUUGUCAUAG ..(((.(((((....(((((((((....(((((.(((.-.....))))))))......((.((((((((...........))))..)))).))))))))))-)))))))))............. ( -29.70, z-score = -1.24, R) >droSec1.super_5 168182 103 - 5866729 UAAGCCGCUUAUUAGGGUCUAGUCGUAAUCUUGUGAAU--UUUUUUCUAAGACCUUAAUUGUGCUUAGAUUAAUCAUCGUUCUAGUAGCAGGAGGCUAGUC-AUAG------------------ ..((((.....(((((((((((......((....))..--......)).)))))))))((.((((((((...........))))..)))).))))))....-....------------------ ( -22.84, z-score = -0.70, R) >droYak2.chr2R 19893769 122 - 21139217 UAAGCCUCUUAUUAGGGUCUAGUCGUAAUCUUGUGAAU-GUUUUUUCUAAGACCUUAAUUGUUCUUAGAUUAAUCAUCUUAUAAGAAGCAAGAGAGUAGAC-UAAAGUGCUACGUUUGUCAUAC ..(((..(((.....((((((.((....((((((((((-(.((..(((((((.(......).)))))))..)).))).)))))))).......)).)))))-).))).)))............. ( -28.90, z-score = -1.72, R) >droEre2.scaffold_4845 21290280 115 - 22589142 AAAGCCGCUUAUUAGGGUCUAGUCGUAAUUUUGUGAAUAUUUUUUUCUAAGACCUUAAUUGUUCUUAGAUUAAUCAUCAUUAUAGUCGCAAGAGACUAGACUACAUUUGUCAUAG--------- ...............(((((((((....((((((((.(((.((..(((((((.(......).)))))))..))........))).))))))))))))))))).............--------- ( -26.60, z-score = -2.62, R) >consensus UAAGCCGCUUAUUAGGGUCUAGUCGUAAUCUUGUGAAU_GUUUUUUCUAAGACCUUAAUUGUGCUUAGAUUAAUCAUCGUUCUAGUAGCAGGAGGCUAGAC_UUAAGUGCUACAUUUGUCAUA_ ....((........))((((((((....((((((((((...((..((((((..(......)..))))))..)).....)))).....))))))))))))))....................... (-18.84 = -18.96 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:47:08 2011