| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,882,607 – 19,882,709 |
| Length | 102 |
| Max. P | 0.996976 |
| Location | 19,882,607 – 19,882,709 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 81.29 |
| Shannon entropy | 0.32323 |
| G+C content | 0.47962 |
| Mean single sequence MFE | -28.04 |
| Consensus MFE | -24.18 |
| Energy contribution | -24.50 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.86 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.02 |
| SVM RNA-class probability | 0.996976 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19882607 102 - 21146708 AAACACCCACACAGACCCGUUAGUCGACGAGAGUAAUCACAAAUCGAUUCAGCGAAAGCAACCCUGCGAAAGCUCGCUCUCAGAAAGCUGGCGAAAGCUUUC .............(((......)))...((((((.................((....))......((....))..)))))).(((((((......))))))) ( -28.60, z-score = -2.75, R) >droEre2.scaffold_4845 21255708 92 - 22589142 ----------AAUCAUCCGUUAAUCAACAAGAGUAAUCACAAAUCGAUUCAGCGAAAGCAACCCUGCGAAAGCUCGCUCUUGGAAAGCUGCCGAAAGCUUUC ----------.................(((((((.................((....))......((....))..)))))))(((((((......))))))) ( -26.70, z-score = -3.36, R) >droYak2.chr2R 19860968 80 - 21139217 ---------------------AAACAACAAGAGUAAUCACAAAUCGAUUCAGCGAAAGCAACUCUGCGAAAGCUCGCUC-UGAAAAGCUGGCGAAAGCUUUC ---------------------........(((((((((.......))))..((....)).)))))..((((((((((((-(....))..)))))..)))))) ( -23.00, z-score = -2.31, R) >droSec1.super_9 3166574 97 - 3197100 AAACACCCACACAGACCCGUUAGUCGACGAGAGUAAACACAAAUCGAUUCAGCGAAAG-----CUGCGAAAGCUCGCUCUCGGAAAGCUGGCGAAAGCUUUC .............(((......)))..(((((((................(((....)-----))((....))..)))))))(((((((......))))))) ( -31.30, z-score = -2.97, R) >droSim1.chr2R 18427707 102 - 19596830 AAACACCCACACAGACCCGUUAGUCGACGAGAGUAAACACAAAUCGAUUCAGCGAAAGCAACCCUGCGAAAGCUCGCUCUCGGAAAGCUGGCGAAAGCUUUC .............(((......)))..(((((((.................((....))......((....))..)))))))(((((((......))))))) ( -30.60, z-score = -2.91, R) >consensus AAACACCCACACAGACCCGUUAGUCGACGAGAGUAAUCACAAAUCGAUUCAGCGAAAGCAACCCUGCGAAAGCUCGCUCUCGGAAAGCUGGCGAAAGCUUUC ...........................(((((((.................((....))......((....))..)))))))(((((((......))))))) (-24.18 = -24.50 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:47:05 2011