| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,876,557 – 19,876,612 |
| Length | 55 |
| Max. P | 0.977868 |
| Location | 19,876,557 – 19,876,612 |
|---|---|
| Length | 55 |
| Sequences | 9 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 78.59 |
| Shannon entropy | 0.43919 |
| G+C content | 0.50505 |
| Mean single sequence MFE | -12.28 |
| Consensus MFE | -9.08 |
| Energy contribution | -9.16 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.98 |
| SVM RNA-class probability | 0.977868 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2R 19876557 55 + 21146708 GCAUGCUGAACAUGAUGGACGCCAGCUCCUUCAGCAUGCCCCCCCCCAAUCUGCA ((((((((((.....(((...))).....))))))))))................ ( -17.30, z-score = -3.00, R) >droSim1.chr2R 18421643 55 + 19596830 GCAUGCUGAACAUGAUGGACGCCAGCUCCUUCAGCAUGCCGCCCCCCAAUCUGCA ((((((((((.....(((...))).....))))))))))................ ( -17.30, z-score = -2.20, R) >droSec1.super_9 3160549 55 + 3197100 GCAUGCUGAACAUGAUGGACGCCAGCUCCUUCAGCAUGCCGCCCCCCAAUCUGCA ((((((((((.....(((...))).....))))))))))................ ( -17.30, z-score = -2.20, R) >droYak2.chr2R 19854961 55 + 21139217 GCAUGCUGAACAUGAUGGACGCCAGCUCCUUCAGCAUGCCGCCCCCCAAUCUGCA ((((((((((.....(((...))).....))))))))))................ ( -17.30, z-score = -2.20, R) >droEre2.scaffold_4845 21249640 55 + 22589142 GCAUGCUGAACAUGAUGGACGCCAGCUCCUUCAGCAUGCCACCCCCCAAUCUGCA ((((((((((.....(((...))).....))))))))))................ ( -17.30, z-score = -2.71, R) >droAna3.scaffold_13266 5746594 55 + 19884421 GCAUGCUAAACCUCAUUGACGCCAGUUCCUUCAGUAUGCCGCCUCCGAACCUUCA (((((((.......((((....))))......)))))))................ ( -8.32, z-score = -1.37, R) >dp4.chr3 7558405 55 + 19779522 GUAUUUUAAAUAUGAUGGAUCCAAACACCUUUAAUAUGCCGCCUCCCAACUUACA ((((.(((((..((.((....))..))..))))).))))................ ( -4.00, z-score = -0.22, R) >droPer1.super_2 7753792 55 + 9036312 GUAUUUUAAAUAUGAUGGAUCCAAACGCCUUUAAUAUGCCGCCUCCCAACUUACA ((((.(((((..((.((....))..))..))))).))))................ ( -3.30, z-score = 0.50, R) >droWil1.scaffold_180569 401526 55 - 1405142 GUAAAUUAAAUUUAAUGGAUACCAAUUCGUUAAAUAUUCCUCCGCCCAAUUUACA (((((((..(((((((((((....)))))))))))............))))))). ( -8.44, z-score = -2.97, R) >consensus GCAUGCUGAACAUGAUGGACGCCAGCUCCUUCAGCAUGCCGCCCCCCAAUCUGCA ((((((((((......(((.......)))))))))))))................ ( -9.08 = -9.16 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:47:04 2011