| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,845,347 – 19,845,452 |
| Length | 105 |
| Max. P | 0.987545 |
| Location | 19,845,347 – 19,845,452 |
|---|---|
| Length | 105 |
| Sequences | 7 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.92 |
| Shannon entropy | 0.33602 |
| G+C content | 0.38375 |
| Mean single sequence MFE | -26.32 |
| Consensus MFE | -13.78 |
| Energy contribution | -14.56 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.24 |
| Mean z-score | -3.23 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.28 |
| SVM RNA-class probability | 0.987545 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19845347 105 + 21146708 UACAAGCUCGAAUCACACACAAAU---------CUGGGGGCAUACA------CAUAUAUCUGUCUGCAGGUAAACACGUUGUUUACAGCCACCCAGCUAUAUAACACUAAUUUGAGCUGA ....(((((((((...........---------((((((((.....------.......(((....)))((((((.....)))))).))).))))).............))))))))).. ( -31.95, z-score = -4.33, R) >droPer1.super_2 1982549 112 + 9036312 UACAAGUUCAAACCGCAUAUACAUAGGAUAGGCCUGAAAGUGUAUAAGUAUAUAUACAUUCGUCUAUA-GUAAACACGUUGUUUACAGAAAGCUAGCUAUAUCACUCUUAAUU------- ..............(.(((((..(((.((((((..(((.(((((((....))))))).))))))))).-((((((.....))))))......)))..))))))..........------- ( -20.60, z-score = -0.91, R) >droAna3.scaffold_13266 5710966 101 + 19884421 UACAAGCUCGAAUCACACA--AAU---------CUGGGAGCCUAUA------CAUAUAUUUGUCUACAAGUAAACACGUUGUUUACAGACACCUAG--AUAUAAAACUAAUUUAAGCUAA ....((((..(((......--.((---------(((((.(......------).......(((((....((((((.....))))))))))))))))--)).........)))..)))).. ( -20.39, z-score = -3.00, R) >droEre2.scaffold_4845 21218187 105 + 22589142 UACAAGCUCGAAUCACACACAAAU---------CUGGGGGCAUACA------CAUAUAUCUGUCUGCAGGUAAACACGUUGUUUACAGCCACCUAGCUAUAUAACACUAAUUUAAGCUAG ....((((..(((...........---------((((((((.....------.......(((....)))((((((.....)))))).))).))))).............)))..)))).. ( -25.05, z-score = -3.08, R) >droYak2.chr2R 19822700 105 + 21139217 UACAAGCUCGAAUCACACACAAAU---------CUGGGGGCAUACA------CAUAUAUCUGUCUGCAGGUAAACACGUUGUUUACAGCCCCCUAUCUAUAUAACACUAAUUUAAGCUAA ....((((..(((...........---------..((((((.....------.......(((....)))((((((.....)))))).))))))................)))..)))).. ( -26.95, z-score = -4.04, R) >droSec1.super_9 3129238 105 + 3197100 UACAAGCUCGAAUCACACACAAAU---------CUGGGGGCAUAUA------CAUAUAUCUGUCUGCAUGUAAACACGUUGUUUACAGCCACCCAGCUAUAUAACACUAAUUUGAGUUGG ....(((((((((...........---------((((((((....(------((......))).....(((((((.....)))))))))).))))).............))))))))).. ( -27.35, z-score = -2.86, R) >droSim1.chr2R_random 2887255 105 + 2996586 UACAAGCUCGAAUCACACACAAAU---------CUGGGGGCAUACA------CAUAUAUCUGUCUGCAGGUAAACACGUUGUUUACAGCCACCCAGCUAUAUAACACUAAUUUGAGCUGG ....(((((((((...........---------((((((((.....------.......(((....)))((((((.....)))))).))).))))).............))))))))).. ( -31.95, z-score = -4.35, R) >consensus UACAAGCUCGAAUCACACACAAAU_________CUGGGGGCAUACA______CAUAUAUCUGUCUGCAGGUAAACACGUUGUUUACAGCCACCUAGCUAUAUAACACUAAUUUAAGCUAA .................................((((((((..................(((....)))((((((.....)))))).))).)))))........................ (-13.78 = -14.56 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:47:03 2011