| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,787,615 – 3,787,707 |
| Length | 92 |
| Max. P | 0.549106 |
| Location | 3,787,615 – 3,787,707 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 83.48 |
| Shannon entropy | 0.30128 |
| G+C content | 0.35167 |
| Mean single sequence MFE | -18.90 |
| Consensus MFE | -11.40 |
| Energy contribution | -12.08 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.549106 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3787615 92 + 23011544 AAUGACGGCUUAAAAGUAAUAGGAUUCUGGAGCAAAAGAAUCAAAUAUACGAAUGUGUUCCACUUAAAAAUAGGUGGUCUAUGUGUAAAUUC ...............(((....((((((........)))))).....)))..(((((..(((((((....)))))))..)))))........ ( -17.10, z-score = -1.47, R) >droSim1.chr2L 3743636 92 + 22036055 AAUGAUGGCUUAAAAGUAAUAGGAUUCUGGAGCAAAAGAAUCAAAUAUACGAGUGUGUUCCACUUAAAAAUAGGUGGUCUAUGUGCAAAUUC ...(((.(((((...(((....((((((........)))))).....)))(((((.....))))).....))))).)))............. ( -19.10, z-score = -1.84, R) >droSec1.super_5 1889748 71 + 5866729 AAUGACGGCUUAAAAGUAAUAGGAUUCUGGAGCAAAAGAAUC---------------------CUAAAAAUAGGUGGUCUAUGUGCAAAUUC ...(((.(((((.......(((((((((........))))))---------------------)))....))))).)))............. ( -19.20, z-score = -3.87, R) >droYak2.chr2L 3788798 91 + 22324452 AAAGACGGCU-AAAAGUGAUAGGAUUCUGGAGCAAAAGAAUCAAAUAUACGAGUUUGUGCCACUUAAAAAUUGGUGGCCAAUGUGCAAAUUG .......((.-....(((.((.((((((........))))))...)))))....(((.((((((........)))))))))...))...... ( -20.30, z-score = -1.56, R) >droEre2.scaffold_4929 3832985 92 + 26641161 AAUGACGGCUUAAAAGUGAUCGGAUUCUGGAGCAAAAGAAUCAAAUAUAUGAGCUUGUUCCACUUAAAAAUAGGUGGUCUGUGUGCAAAUUG ...(((((((((......((..((((((........))))))..))...))))).))))(((((((....)))))))............... ( -18.80, z-score = -0.86, R) >consensus AAUGACGGCUUAAAAGUAAUAGGAUUCUGGAGCAAAAGAAUCAAAUAUACGAGUGUGUUCCACUUAAAAAUAGGUGGUCUAUGUGCAAAUUC .......((.............((((((........)))))).................(((((((....))))))).......))...... (-11.40 = -12.08 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:14:39 2011