| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,821,915 – 19,822,010 |
| Length | 95 |
| Max. P | 0.843867 |
| Location | 19,821,915 – 19,822,010 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 91.77 |
| Shannon entropy | 0.14076 |
| G+C content | 0.37095 |
| Mean single sequence MFE | -23.64 |
| Consensus MFE | -19.64 |
| Energy contribution | -20.64 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.843867 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19821915 95 + 21146708 UACUACUUAUAUUUUGAGCACAGAGACGUGUGUUUCGAAAACAUCUUCAUGCAUAUAGCCUAUAUAUACCCCUAAAAUACACAUGUGUGUGUGCA .................(((((.(.((((((((...(((......)))....(((((.....)))))...........)))))))).).))))). ( -22.50, z-score = -2.28, R) >droSim1.chr2R 18374304 95 + 19596830 AACUACUUAUAUUUUGAGCACACAGACGUGUGUUUCGAAAACAUCGUCAUGCAUAUAGCCUAUAUAUACCCCUGAAAUACACAUGUGUGUGUGCA .................(((((((.((((((((..(((.....)))(((.(..((((.......))))..).)))...)))))))).))))))). ( -26.60, z-score = -2.99, R) >droSec1.super_9 3105888 95 + 3197100 AACUACUUAUAUUUUGAGCACACAGACGUGUGUUUCGAAAACAUCGUCAUGCAUAUAGCCUAUAUAUACCCCUGAAAUACACAUGUGUGUGUGCA .................(((((((.((((((((..(((.....)))(((.(..((((.......))))..).)))...)))))))).))))))). ( -26.60, z-score = -2.99, R) >droYak2.chr2R 19799491 93 + 21139217 AACUACUUAUAUUUUGGGCACAGAGACGUGUGUUUCGAAAACAUCAUCAUGCAUAUAGCCUAUAUA--CCUCUAAUGAACACAUGUGUGUGUGCA .................(((((.(.((((((((((...............((.....)).......--........)))))))))).).))))). ( -23.01, z-score = -1.26, R) >droEre2.scaffold_4845 21194685 91 + 22589142 AACUACUUAUAUUUUGAGCACACAGACGUGUGUUUCGAAAACAUCAUCAUGCAUAUAGCCUAUAUA--CCUCUAAUGUACACAUGUGUGUGCA-- ...........((((((((((((....))))).)))))))..........((.....)).......--.......(((((((....)))))))-- ( -19.50, z-score = -0.81, R) >consensus AACUACUUAUAUUUUGAGCACACAGACGUGUGUUUCGAAAACAUCAUCAUGCAUAUAGCCUAUAUAUACCCCUAAAAUACACAUGUGUGUGUGCA .................(((((((.((((((((...((........))..((.....))...................)))))))).))))))). (-19.64 = -20.64 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:46:55 2011