| Sequence ID | dm3.chr2R |
|---|---|
| Location | 19,821,239 – 19,821,359 |
| Length | 120 |
| Max. P | 0.842924 |
| Location | 19,821,239 – 19,821,359 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.67 |
| Shannon entropy | 0.12948 |
| G+C content | 0.42667 |
| Mean single sequence MFE | -26.04 |
| Consensus MFE | -24.80 |
| Energy contribution | -25.48 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.842924 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 19821239 120 - 21146708 UUCCUAUAUCACCUCAGCUAUCGGUAUUACUGAACACGGAAACUCAACAGUUAGCCAUCGCAGUUGAGAUUCUCAGUUAUCGAUAACGCCGGCUAUCGCAGUUUAGUAGCACAAAUUGAA .............((((.((((((((..(((((.....(((.((((((.((........)).)))))).))))))))))))))))..((..((((........)))).)).....)))). ( -25.70, z-score = -0.97, R) >droEre2.scaffold_4845 21193992 120 - 22589142 UUUCCUACCCACCUCAGCCAUCGGUAUUAUUGAACACGGAAACUCAACAGUAAUCCAUCGUAGUUAAGAUUCUCAGUUAUCGAUAACGCCGGCUAUCGCAGCUUAGUUGCACAAAUUGAA ...............((((...((.(((((((.....(....)....)))))))))......((((.(((........)))..))))...))))...(((((...))))).......... ( -23.00, z-score = -0.98, R) >droYak2.chr2R 19798779 120 - 21139217 UUCCUUACCCACCUCAGCUAUCGGUAUUAUUGAACACGGAAACUCAACAGUUAACCAUCGCAGUUAAGACUCCCAGUUAUCGAUAACGCCGGCUAUCGCAGUUAAGUAGCACAAAUUGAA ................((((((((..(((((((((..(((..((.(((.((........)).))).))..)))..))..)))))))..)))((....))......))))).......... ( -22.50, z-score = -0.93, R) >droSec1.super_9 3105206 120 - 3197100 UUCCCAUCUCACCUCAGCUAUCGGUAUUAUUGAACAAGGAAACUCAACAGUUAGCCAUCGCAGUUGAGAUUCUCAGUUAUCGAUAACGCCGGCUAUCGCAGUUUAGUAGCACAAAUUGAA ................((((((((..(((((((((..((((.((((((.((........)).)))))).))))..))..)))))))..)))((....))......))))).......... ( -29.80, z-score = -2.61, R) >droSim1.chr2R 18373626 120 - 19596830 UUGCUAUCUCACCUCAGCUAUCGGUAUUAUUGAACACGGAAACUCAACAGUUAGCCAUCGCAGUUGAGAUUCUCAGUUAUCGAUAACGCCGGCUAUCGCAGUUUAGUAGCACAAAUUGAA .((((((..............(((..(((((((((..((((.((((((.((........)).)))))).))))..))..)))))))..)))((....))......))))))......... ( -29.20, z-score = -1.58, R) >consensus UUCCUAUCUCACCUCAGCUAUCGGUAUUAUUGAACACGGAAACUCAACAGUUAGCCAUCGCAGUUGAGAUUCUCAGUUAUCGAUAACGCCGGCUAUCGCAGUUUAGUAGCACAAAUUGAA ................((((((((..(((((((((..((((.((((((.((........)).)))))).))))..))..)))))))..)))((....))......))))).......... (-24.80 = -25.48 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:46:55 2011